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Cluster: HRGMv2_4524_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4524_1 HRGMv2_4524_1_23 21947 23584 - 4.C.1.1.4
STP HRGMv2_4524_1 HRGMv2_4524_1_24 23802 25118 + AAA
CAZyme HRGMv2_4524_1 HRGMv2_4524_1_25 25463 26641 - GT28
pfam HRGMv2_4524_1 HRGMv2_4524_1_26 26715 26993 - SpoVG
pfam HRGMv2_4524_1 HRGMv2_4524_1_27 27204 28583 + Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC HRGMv2_4524_1 HRGMv2_4524_1_28 28651 29670 - 1.A.33.1.5
STP HRGMv2_4524_1 HRGMv2_4524_1_29 29828 30463 - Pribosyltran
TC HRGMv2_4524_1 HRGMv2_4524_1_30 30464 32728 - 3.A.7.16.1
Gene ID: HRGMv2_4524_1_23
Type: TC
Location: 21947 - 23584 (-)
Gene ID: HRGMv2_4524_1_24
Type: STP
Location: 23802 - 25118 (+)
Gene ID: HRGMv2_4524_1_25
Type: CAZyme
Location: 25463 - 26641 (-)
Gene ID: HRGMv2_4524_1_26
Type: pfam
Location: 26715 - 26993 (-)
Gene ID: HRGMv2_4524_1_27
Type: pfam
Location: 27204 - 28583 (+)
Gene ID: HRGMv2_4524_1_28
Type: TC
Location: 28651 - 29670 (-)
Gene ID: HRGMv2_4524_1_29
Type: STP
Location: 29828 - 30463 (-)
Gene ID: HRGMv2_4524_1_30
Type: TC
Location: 30464 - 32728 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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