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Cluster: HRGMv2_4523_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4523_3 HRGMv2_4523_3_23 25454 26338 + 3.A.1.1.18
TC HRGMv2_4523_3 HRGMv2_4523_3_24 26351 27238 + 3.A.1.1.25
pfam HRGMv2_4523_3 HRGMv2_4523_3_25 27248 27436 + DUF6903
CAZyme HRGMv2_4523_3 HRGMv2_4523_3_26 27467 29629 + GH112
pfam HRGMv2_4523_3 HRGMv2_4523_3_27 29934 31727 - Flavin_Reduct | Flavodoxin_5 | ODP | RUBY_RBDX
pfam HRGMv2_4523_3 HRGMv2_4523_3_28 32228 33457 + Bmp
TC HRGMv2_4523_3 HRGMv2_4523_3_29 33557 35092 + 3.A.1.2.12
TC HRGMv2_4523_3 HRGMv2_4523_3_30 35085 36197 + 3.A.1.2.12
Gene ID: HRGMv2_4523_3_23
Type: TC
Location: 25454 - 26338 (+)
Gene ID: HRGMv2_4523_3_24
Type: TC
Location: 26351 - 27238 (+)
Gene ID: HRGMv2_4523_3_25
Type: pfam
Location: 27248 - 27436 (+)
Gene ID: HRGMv2_4523_3_26
Type: CAZyme
Location: 27467 - 29629 (+)
Gene ID: HRGMv2_4523_3_27
Type: pfam
Location: 29934 - 31727 (-)
Gene ID: HRGMv2_4523_3_28
Type: pfam
Location: 32228 - 33457 (+)
Gene ID: HRGMv2_4523_3_29
Type: TC
Location: 33557 - 35092 (+)
Gene ID: HRGMv2_4523_3_30
Type: TC
Location: 35085 - 36197 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4523_3_28 vegetarian > vegan 1.18571 0.01882

🧭 Explore Read Mapping of CGC

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