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Cluster: HRGMv2_4523_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4523_2 HRGMv2_4523_2_111 115277 115642 - 9.B.55.2.1
peptidase HRGMv2_4523_2 HRGMv2_4523_2_112 115796 118483 + C66.UPW
TC HRGMv2_4523_2 HRGMv2_4523_2_113 118555 119790 - 9.A.40.2.2
TF HRGMv2_4523_2 HRGMv2_4523_2_114 120074 120982 - HTH_AraC
TC HRGMv2_4523_2 HRGMv2_4523_2_115 121142 121969 - 3.A.1.1.36
TC HRGMv2_4523_2 HRGMv2_4523_2_116 121986 122909 - 3.A.1.1.11
STP HRGMv2_4523_2 HRGMv2_4523_2_117 122924 124201 - SBP_bac_1
CAZyme HRGMv2_4523_2 HRGMv2_4523_2_118 124274 125560 - GH177
TC HRGMv2_4523_2 HRGMv2_4523_2_119 125937 126878 - 2.A.98.1.4
Gene ID: HRGMv2_4523_2_111
Type: TC
Location: 115277 - 115642 (-)
Gene ID: HRGMv2_4523_2_112
Type: peptidase
Location: 115796 - 118483 (+)
Gene ID: HRGMv2_4523_2_113
Type: TC
Location: 118555 - 119790 (-)
Gene ID: HRGMv2_4523_2_114
Type: TF
Location: 120074 - 120982 (-)
Gene ID: HRGMv2_4523_2_115
Type: TC
Location: 121142 - 121969 (-)
Gene ID: HRGMv2_4523_2_116
Type: TC
Location: 121986 - 122909 (-)
Gene ID: HRGMv2_4523_2_117
Type: STP
Location: 122924 - 124201 (-)
Gene ID: HRGMv2_4523_2_118
Type: CAZyme
Location: 124274 - 125560 (-)
Gene ID: HRGMv2_4523_2_119
Type: TC
Location: 125937 - 126878 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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