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Cluster: HRGMv2_4523_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4523_22 HRGMv2_4523_22_18 17603 19912 - 3.A.9.1.2
pfam HRGMv2_4523_22 HRGMv2_4523_22_19 20005 20784 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_4523_22 HRGMv2_4523_22_20 20794 21606 - 3.A.1.25.4
TC HRGMv2_4523_22 HRGMv2_4523_22_21 21593 21961 - 3.A.1.26.9
TC HRGMv2_4523_22 HRGMv2_4523_22_22 21963 22472 - 3.A.1.25.6
TC HRGMv2_4523_22 HRGMv2_4523_22_23 22493 23341 - 3.A.1.26.7
pfam HRGMv2_4523_22 HRGMv2_4523_22_24 23354 24229 - Cons_hypoth95 | Methyltrans_SAM
CAZyme HRGMv2_4523_22 HRGMv2_4523_22_25 24251 26740 - GT51
Gene ID: HRGMv2_4523_22_18
Type: TC
Location: 17603 - 19912 (-)
Gene ID: HRGMv2_4523_22_19
Type: pfam
Location: 20005 - 20784 (-)
Gene ID: HRGMv2_4523_22_20
Type: TC
Location: 20794 - 21606 (-)
Gene ID: HRGMv2_4523_22_21
Type: TC
Location: 21593 - 21961 (-)
Gene ID: HRGMv2_4523_22_22
Type: TC
Location: 21963 - 22472 (-)
Gene ID: HRGMv2_4523_22_23
Type: TC
Location: 22493 - 23341 (-)
Gene ID: HRGMv2_4523_22_24
Type: pfam
Location: 23354 - 24229 (-)
Gene ID: HRGMv2_4523_22_25
Type: CAZyme
Location: 24251 - 26740 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4523_22_22 vegetarian > omnivore 1.17268 0.02242

🧭 Explore Read Mapping of CGC

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