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Cluster: HRGMv2_4523_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4523_19 HRGMv2_4523_19_17 20873 23074 - GH3
TF HRGMv2_4523_19 HRGMv2_4523_19_18 23153 24178 - LacI
pfam HRGMv2_4523_19 HRGMv2_4523_19_19 24410 25930 - DUF3502 | SBP_bac_8
TC HRGMv2_4523_19 HRGMv2_4523_19_20 25984 26883 - 3.A.1.1.29
TC HRGMv2_4523_19 HRGMv2_4523_19_21 26901 27836 - 3.A.1.1.10
CAZyme HRGMv2_4523_19 HRGMv2_4523_19_22 28299 31601 + GH94
TC HRGMv2_4523_19 HRGMv2_4523_19_23 31705 32349 - 9.B.28.1.8
pfam HRGMv2_4523_19 HRGMv2_4523_19_24 33209 34012 - YdjC
TC HRGMv2_4523_19 HRGMv2_4523_19_25 34009 35457 - 4.A.1.2.3
Gene ID: HRGMv2_4523_19_17
Type: CAZyme
Location: 20873 - 23074 (-)
Gene ID: HRGMv2_4523_19_18
Type: TF
Location: 23153 - 24178 (-)
Gene ID: HRGMv2_4523_19_19
Type: pfam
Location: 24410 - 25930 (-)
Gene ID: HRGMv2_4523_19_20
Type: TC
Location: 25984 - 26883 (-)
Gene ID: HRGMv2_4523_19_21
Type: TC
Location: 26901 - 27836 (-)
Gene ID: HRGMv2_4523_19_22
Type: CAZyme
Location: 28299 - 31601 (+)
Gene ID: HRGMv2_4523_19_23
Type: TC
Location: 31705 - 32349 (-)
Gene ID: HRGMv2_4523_19_24
Type: pfam
Location: 33209 - 34012 (-)
Gene ID: HRGMv2_4523_19_25
Type: TC
Location: 34009 - 35457 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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