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Cluster: HRGMv2_4523_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4523_2 HRGMv2_4523_2_19 15236 16792 + GH77
TC HRGMv2_4523_2 HRGMv2_4523_2_20 17415 17720 + 4.A.3.2.8
TC HRGMv2_4523_2 HRGMv2_4523_2_21 17741 18037 + 4.A.3.2.6
TC HRGMv2_4523_2 HRGMv2_4523_2_22 18050 19372 + 4.A.3.2.3
CAZyme HRGMv2_4523_2 HRGMv2_4523_2_23 19444 20628 + GH170
CAZyme HRGMv2_4523_2 HRGMv2_4523_2_24 20643 22079 + GH1
CAZyme HRGMv2_4523_2 HRGMv2_4523_2_25 22072 23553 + GH1
Gene ID: HRGMv2_4523_2_19
Type: CAZyme
Location: 15236 - 16792 (+)
Gene ID: HRGMv2_4523_2_20
Type: TC
Location: 17415 - 17720 (+)
Gene ID: HRGMv2_4523_2_21
Type: TC
Location: 17741 - 18037 (+)
Gene ID: HRGMv2_4523_2_22
Type: TC
Location: 18050 - 19372 (+)
Gene ID: HRGMv2_4523_2_23
Type: CAZyme
Location: 19444 - 20628 (+)
Gene ID: HRGMv2_4523_2_24
Type: CAZyme
Location: 20643 - 22079 (+)
Gene ID: HRGMv2_4523_2_25
Type: CAZyme
Location: 22072 - 23553 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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