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Cluster: HRGMv2_4523_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4523_11 HRGMv2_4523_11_21 20451 23822 + GH33
TF HRGMv2_4523_11 HRGMv2_4523_11_22 23939 24922 - HTH_AraC | HTH_AraC
TC HRGMv2_4523_11 HRGMv2_4523_11_23 25095 26501 + 2.A.2.3.1
pfam HRGMv2_4523_11 HRGMv2_4523_11_24 26569 27399 + Creatininase
TC HRGMv2_4523_11 HRGMv2_4523_11_25 27707 30367 + 3.A.3.2.21
TC HRGMv2_4523_11 HRGMv2_4523_11_26 30561 31388 - 3.A.1.29.1
TC HRGMv2_4523_11 HRGMv2_4523_11_27 31381 33096 - 3.A.1.29.1
TC HRGMv2_4523_11 HRGMv2_4523_11_28 33160 33708 - 3.A.1.29.1
pfam HRGMv2_4523_11 HRGMv2_4523_11_29 33761 34609 - SAM_HAT_N | SAM_HAT_C
pfam HRGMv2_4523_11 HRGMv2_4523_11_30 34734 36338 - Lactamase_B | RMMBL | Beta-Casp | Lactamase_B_2 | Lactamase_B_6
CAZyme HRGMv2_4523_11 HRGMv2_4523_11_31 36503 37750 - GH29
Gene ID: HRGMv2_4523_11_21
Type: CAZyme
Location: 20451 - 23822 (+)
Gene ID: HRGMv2_4523_11_22
Type: TF
Location: 23939 - 24922 (-)
Gene ID: HRGMv2_4523_11_23
Type: TC
Location: 25095 - 26501 (+)
Gene ID: HRGMv2_4523_11_24
Type: pfam
Location: 26569 - 27399 (+)
Gene ID: HRGMv2_4523_11_25
Type: TC
Location: 27707 - 30367 (+)
Gene ID: HRGMv2_4523_11_26
Type: TC
Location: 30561 - 31388 (-)
Gene ID: HRGMv2_4523_11_27
Type: TC
Location: 31381 - 33096 (-)
Gene ID: HRGMv2_4523_11_28
Type: TC
Location: 33160 - 33708 (-)
Gene ID: HRGMv2_4523_11_29
Type: pfam
Location: 33761 - 34609 (-)
Gene ID: HRGMv2_4523_11_30
Type: pfam
Location: 34734 - 36338 (-)
Gene ID: HRGMv2_4523_11_31
Type: CAZyme
Location: 36503 - 37750 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4523_11_25 vegetarian > vegan 1.27537 0.01882

🧭 Explore Read Mapping of CGC

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