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Cluster: HRGMv2_4523_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4523_1 HRGMv2_4523_1_152 155150 156094 - CE1
pfam HRGMv2_4523_1 HRGMv2_4523_1_153 156401 157177 - DAP_epimerase | DAP_epimerase
TC HRGMv2_4523_1 HRGMv2_4523_1_154 157256 158635 - 1.A.26.1.2
pfam HRGMv2_4523_1 HRGMv2_4523_1_155 158906 159454 + Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_7
CAZyme HRGMv2_4523_1 HRGMv2_4523_1_156 159675 161558 + CBM48 | GH13_9
pfam HRGMv2_4523_1 HRGMv2_4523_1_157 161637 162827 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_4523_1 HRGMv2_4523_1_158 162842 163957 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_4523_1 HRGMv2_4523_1_159 163954 165399 + GT5
CAZyme HRGMv2_4523_1 HRGMv2_4523_1_160 165705 167546 + GH13_39
Gene ID: HRGMv2_4523_1_152
Type: CAZyme
Location: 155150 - 156094 (-)
Gene ID: HRGMv2_4523_1_153
Type: pfam
Location: 156401 - 157177 (-)
Gene ID: HRGMv2_4523_1_154
Type: TC
Location: 157256 - 158635 (-)
Gene ID: HRGMv2_4523_1_155
Type: pfam
Location: 158906 - 159454 (+)
Gene ID: HRGMv2_4523_1_156
Type: CAZyme
Location: 159675 - 161558 (+)
Gene ID: HRGMv2_4523_1_157
Type: pfam
Location: 161637 - 162827 (+)
Gene ID: HRGMv2_4523_1_158
Type: pfam
Location: 162842 - 163957 (+)
Gene ID: HRGMv2_4523_1_159
Type: CAZyme
Location: 163954 - 165399 (+)
Gene ID: HRGMv2_4523_1_160
Type: CAZyme
Location: 165705 - 167546 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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