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Cluster: HRGMv2_4520_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4520_30 HRGMv2_4520_30_17 24224 25249 + CE4
pfam HRGMv2_4520_30 HRGMv2_4520_30_18 25303 26226 - EamA | EamA
NULL(UNKNOWN) HRGMv2_4520_30 HRGMv2_4520_30_19 26534 26950 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4520_30 HRGMv2_4520_30_20 27116 29077 - GH13_14
pfam HRGMv2_4520_30 HRGMv2_4520_30_21 29099 29968 - PS_Dcarbxylase
pfam HRGMv2_4520_30 HRGMv2_4520_30_22 30037 30672 - CDP-OH_P_transf
TC HRGMv2_4520_30 HRGMv2_4520_30_23 30697 31749 - 4.D.2.1.5
TC HRGMv2_4520_30 HRGMv2_4520_30_24 31877 32803 - 9.B.146.1.3
Gene ID: HRGMv2_4520_30_17
Type: CAZyme
Location: 24224 - 25249 (+)
Gene ID: HRGMv2_4520_30_18
Type: pfam
Location: 25303 - 26226 (-)
Gene ID: HRGMv2_4520_30_19
Type:
Location: 26534 - 26950 (-)
Gene ID: HRGMv2_4520_30_20
Type: CAZyme
Location: 27116 - 29077 (-)
Gene ID: HRGMv2_4520_30_21
Type: pfam
Location: 29099 - 29968 (-)
Gene ID: HRGMv2_4520_30_22
Type: pfam
Location: 30037 - 30672 (-)
Gene ID: HRGMv2_4520_30_23
Type: TC
Location: 30697 - 31749 (-)
Gene ID: HRGMv2_4520_30_24
Type: TC
Location: 31877 - 32803 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
FB2012
→
Species
FB2012 sp019420505

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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