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Cluster: HRGMv2_4436_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4436_6 HRGMv2_4436_6_21 21874 23346 - 4.C.1.1.4
TC HRGMv2_4436_6 HRGMv2_4436_6_22 23393 24898 - 4.C.1.1.4
pfam HRGMv2_4436_6 HRGMv2_4436_6_23 25275 26414 + Acyl_transf_3
NULL(UNKNOWN) HRGMv2_4436_6 HRGMv2_4436_6_24 26471 27298 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4436_6 HRGMv2_4436_6_25 27322 28932 + GT4
pfam HRGMv2_4436_6 HRGMv2_4436_6_26 29152 30177 + LPG_synthase_TM
NULL(UNKNOWN) HRGMv2_4436_6 HRGMv2_4436_6_27 30278 30730 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4436_6 HRGMv2_4436_6_28 30965 33205 - GH2
TF HRGMv2_4436_6 HRGMv2_4436_6_29 33341 34552 - HTH_AraC | HTH_AraC
TC HRGMv2_4436_6 HRGMv2_4436_6_30 34704 36104 - 2.A.2.3.1
Gene ID: HRGMv2_4436_6_21
Type: TC
Location: 21874 - 23346 (-)
Gene ID: HRGMv2_4436_6_22
Type: TC
Location: 23393 - 24898 (-)
Gene ID: HRGMv2_4436_6_23
Type: pfam
Location: 25275 - 26414 (+)
Gene ID: HRGMv2_4436_6_24
Type:
Location: 26471 - 27298 (+)
Gene ID: HRGMv2_4436_6_25
Type: CAZyme
Location: 27322 - 28932 (+)
Gene ID: HRGMv2_4436_6_26
Type: pfam
Location: 29152 - 30177 (+)
Gene ID: HRGMv2_4436_6_27
Type:
Location: 30278 - 30730 (+)
Gene ID: HRGMv2_4436_6_28
Type: CAZyme
Location: 30965 - 33205 (-)
Gene ID: HRGMv2_4436_6_29
Type: TF
Location: 33341 - 34552 (-)
Gene ID: HRGMv2_4436_6_30
Type: TC
Location: 34704 - 36104 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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