Cluster: HRGMv2_4436_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4436
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4436_6 | HRGMv2_4436_6_8 | 9626 | 10999 | + | 3.A.1.1.11 |
| TC | HRGMv2_4436_6 | HRGMv2_4436_6_9 | 11168 | 12094 | + | 3.A.1.1.11 |
| TC | HRGMv2_4436_6 | HRGMv2_4436_6_10 | 12106 | 12963 | + | 3.A.1.1.11 |
| TF | HRGMv2_4436_6 | HRGMv2_4436_6_11 | 13059 | 13874 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4436_6 | HRGMv2_4436_6_12 | 14006 | 15562 | + | GH28 |
| CAZyme | HRGMv2_4436_6 | HRGMv2_4436_6_13 | 15566 | 16711 | + | GH105 |
Gene ID: HRGMv2_4436_6_8
Type: TC
Location: 9626 - 10999 (+)
Type: TC
Location: 9626 - 10999 (+)
Gene ID: HRGMv2_4436_6_9
Type: TC
Location: 11168 - 12094 (+)
Type: TC
Location: 11168 - 12094 (+)
Gene ID: HRGMv2_4436_6_10
Type: TC
Location: 12106 - 12963 (+)
Type: TC
Location: 12106 - 12963 (+)
Gene ID: HRGMv2_4436_6_11
Type: TF
Location: 13059 - 13874 (-)
Type: TF
Location: 13059 - 13874 (-)
Gene ID: HRGMv2_4436_6_12
Type: CAZyme
Location: 14006 - 15562 (+)
Type: CAZyme
Location: 14006 - 15562 (+)
Gene ID: HRGMv2_4436_6_13
Type: CAZyme
Location: 15566 - 16711 (+)
Type: CAZyme
Location: 15566 - 16711 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934547065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.