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Cluster: HRGMv2_4436_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4436_3 HRGMv2_4436_3_10 9144 10622 - GH77
TC HRGMv2_4436_3 HRGMv2_4436_3_11 10636 11478 - 3.A.1.1.45
TC HRGMv2_4436_3 HRGMv2_4436_3_12 11478 12329 - 3.A.1.1.45
TC HRGMv2_4436_3 HRGMv2_4436_3_13 12426 13769 - 3.A.1.1.45
TF HRGMv2_4436_3 HRGMv2_4436_3_14 13829 14845 - LacI
pfam HRGMv2_4436_3 HRGMv2_4436_3_15 15269 15526 - Ribosomal_S18
TC HRGMv2_4436_3 HRGMv2_4436_3_16 15573 16052 - 3.A.7.19.1
pfam HRGMv2_4436_3 HRGMv2_4436_3_17 16082 16366 - Ribosomal_S6
TC HRGMv2_4436_3 HRGMv2_4436_3_18 16685 17881 + 2.A.37.2.2
Gene ID: HRGMv2_4436_3_10
Type: CAZyme
Location: 9144 - 10622 (-)
Gene ID: HRGMv2_4436_3_11
Type: TC
Location: 10636 - 11478 (-)
Gene ID: HRGMv2_4436_3_12
Type: TC
Location: 11478 - 12329 (-)
Gene ID: HRGMv2_4436_3_13
Type: TC
Location: 12426 - 13769 (-)
Gene ID: HRGMv2_4436_3_14
Type: TF
Location: 13829 - 14845 (-)
Gene ID: HRGMv2_4436_3_15
Type: pfam
Location: 15269 - 15526 (-)
Gene ID: HRGMv2_4436_3_16
Type: TC
Location: 15573 - 16052 (-)
Gene ID: HRGMv2_4436_3_17
Type: pfam
Location: 16082 - 16366 (-)
Gene ID: HRGMv2_4436_3_18
Type: TC
Location: 16685 - 17881 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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