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Cluster: HRGMv2_4436_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4436_29 HRGMv2_4436_29_4 3402 4790 - 2.A.2.3.9
TF HRGMv2_4436_29 HRGMv2_4436_29_5 5133 5936 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4436_29 HRGMv2_4436_29_6 6382 8364 + GH42
TF HRGMv2_4436_29 HRGMv2_4436_29_7 8507 9538 + LacI
pfam HRGMv2_4436_29 HRGMv2_4436_29_8 9817 11097 + SBP_bac_8
TC HRGMv2_4436_29 HRGMv2_4436_29_9 11215 12663 + 3.A.1.1.27
TC HRGMv2_4436_29 HRGMv2_4436_29_10 12660 13568 + 3.A.1.1.27
pfam HRGMv2_4436_29 HRGMv2_4436_29_11 14613 16040 - Resolvase | Recombinase | Zn_ribbon_recom
NULL(UNKNOWN) HRGMv2_4436_29 HRGMv2_4436_29_12 16439 16612 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4436_29 HRGMv2_4436_29_13 16625 19405 - 3.A.3.4.1
pfam HRGMv2_4436_29 HRGMv2_4436_29_14 19423 19734 - DUF3784
TC HRGMv2_4436_29 HRGMv2_4436_29_15 19781 20458 - 9.B.20.1.2
TF HRGMv2_4436_29 HRGMv2_4436_29_16 20567 21067 - Trans_reg_C
TC HRGMv2_4436_29 HRGMv2_4436_29_17 21083 23746 - 3.A.3.4.1
Gene ID: HRGMv2_4436_29_4
Type: TC
Location: 3402 - 4790 (-)
Gene ID: HRGMv2_4436_29_5
Type: TF
Location: 5133 - 5936 (+)
Gene ID: HRGMv2_4436_29_6
Type: CAZyme
Location: 6382 - 8364 (+)
Gene ID: HRGMv2_4436_29_7
Type: TF
Location: 8507 - 9538 (+)
Gene ID: HRGMv2_4436_29_8
Type: pfam
Location: 9817 - 11097 (+)
Gene ID: HRGMv2_4436_29_9
Type: TC
Location: 11215 - 12663 (+)
Gene ID: HRGMv2_4436_29_10
Type: TC
Location: 12660 - 13568 (+)
Gene ID: HRGMv2_4436_29_11
Type: pfam
Location: 14613 - 16040 (-)
Gene ID: HRGMv2_4436_29_12
Type:
Location: 16439 - 16612 (-)
Gene ID: HRGMv2_4436_29_13
Type: TC
Location: 16625 - 19405 (-)
Gene ID: HRGMv2_4436_29_14
Type: pfam
Location: 19423 - 19734 (-)
Gene ID: HRGMv2_4436_29_15
Type: TC
Location: 19781 - 20458 (-)
Gene ID: HRGMv2_4436_29_16
Type: TF
Location: 20567 - 21067 (-)
Gene ID: HRGMv2_4436_29_17
Type: TC
Location: 21083 - 23746 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4436_29_14 vegan > omnivore 2.26606 0.00785
HRGMv2_4436_29_15 vegan > omnivore 2.06574 0.00785
HRGMv2_4436_29_16 vegan > omnivore 1.68524 0.00785
HRGMv2_4436_29_16 vegetarian > omnivore 1.51916 0.04614
HRGMv2_4436_29_17 vegan > omnivore 1.07663 0.00785

🧭 Explore Read Mapping of CGC

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