Cluster: HRGMv2_4436_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4436
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4436_1 | HRGMv2_4436_1_24 | 22068 | 22586 | + | GH23 |
| peptidase | HRGMv2_4436_1 | HRGMv2_4436_1_25 | 22670 | 24070 | + | M18.UPW |
| CAZyme | HRGMv2_4436_1 | HRGMv2_4436_1_26 | 24135 | 24995 | - | CE4 |
| TF | HRGMv2_4436_1 | HRGMv2_4436_1_27 | 26006 | 26482 | + | MarR |
| TC | HRGMv2_4436_1 | HRGMv2_4436_1_28 | 26472 | 28214 | + | 3.A.1.106.9 |
| TC | HRGMv2_4436_1 | HRGMv2_4436_1_29 | 28198 | 29844 | + | 3.A.1.135.9 |
Gene ID: HRGMv2_4436_1_24
Type: CAZyme
Location: 22068 - 22586 (+)
Type: CAZyme
Location: 22068 - 22586 (+)
Gene ID: HRGMv2_4436_1_25
Type: peptidase
Location: 22670 - 24070 (+)
Type: peptidase
Location: 22670 - 24070 (+)
Gene ID: HRGMv2_4436_1_26
Type: CAZyme
Location: 24135 - 24995 (-)
Type: CAZyme
Location: 24135 - 24995 (-)
Gene ID: HRGMv2_4436_1_27
Type: TF
Location: 26006 - 26482 (+)
Type: TF
Location: 26006 - 26482 (+)
Gene ID: HRGMv2_4436_1_28
Type: TC
Location: 26472 - 28214 (+)
Type: TC
Location: 26472 - 28214 (+)
Gene ID: HRGMv2_4436_1_29
Type: TC
Location: 28198 - 29844 (+)
Type: TC
Location: 28198 - 29844 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934547065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4436_1_27 | vegetarian > vegan | 1.01390 | 0.01882 |