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Cluster: HRGMv2_4434_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4434_18 HRGMv2_4434_18_21 18059 20212 - GH36
CAZyme HRGMv2_4434_18 HRGMv2_4434_18_22 20225 22348 - GH36
CAZyme HRGMv2_4434_18 HRGMv2_4434_18_23 22632 24830 - GT51
NULL(UNKNOWN) HRGMv2_4434_18 HRGMv2_4434_18_24 25155 25481 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4434_18 HRGMv2_4434_18_25 25469 26293 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4434_18 HRGMv2_4434_18_26 26626 27747 + GH27
NULL(UNKNOWN) HRGMv2_4434_18 HRGMv2_4434_18_27 27758 28009 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4434_18 HRGMv2_4434_18_28 28151 29563 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
TC HRGMv2_4434_18 HRGMv2_4434_18_29 29583 30509 + 1.A.23.2.1
Gene ID: HRGMv2_4434_18_21
Type: CAZyme
Location: 18059 - 20212 (-)
Gene ID: HRGMv2_4434_18_22
Type: CAZyme
Location: 20225 - 22348 (-)
Gene ID: HRGMv2_4434_18_23
Type: CAZyme
Location: 22632 - 24830 (-)
Gene ID: HRGMv2_4434_18_24
Type:
Location: 25155 - 25481 (+)
Gene ID: HRGMv2_4434_18_25
Type: TF
Location: 25469 - 26293 (-)
Gene ID: HRGMv2_4434_18_26
Type: CAZyme
Location: 26626 - 27747 (+)
Gene ID: HRGMv2_4434_18_27
Type:
Location: 27758 - 28009 (+)
Gene ID: HRGMv2_4434_18_28
Type: pfam
Location: 28151 - 29563 (-)
Gene ID: HRGMv2_4434_18_29
Type: TC
Location: 29583 - 30509 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Acutalibacteraceae
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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