Cluster: HRGMv2_4434_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4434
- CGC Family ID: CGCFAM_03836
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4434_12 | HRGMv2_4434_12_6 | 9308 | 11077 | + | GH173 |
| STP | HRGMv2_4434_12 | HRGMv2_4434_12_7 | 11189 | 14131 | + | SBP_bac_1 |
| NULL(UNKNOWN) | HRGMv2_4434_12 | HRGMv2_4434_12_8 | 14188 | 15063 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4434_12 | HRGMv2_4434_12_9 | 15160 | 16053 | + | 3.A.1.1.48 |
| pfam | HRGMv2_4434_12 | HRGMv2_4434_12_10 | 16083 | 18236 | + | NHL | NHL | Yip1 |
| pfam | HRGMv2_4434_12 | HRGMv2_4434_12_11 | 18263 | 20530 | + | DUF5696 |
| TC | HRGMv2_4434_12 | HRGMv2_4434_12_12 | 20523 | 21485 | + | 3.A.1.1.11 |
| TC | HRGMv2_4434_12 | HRGMv2_4434_12_13 | 21498 | 22439 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4434_12 | HRGMv2_4434_12_14 | 22590 | 24440 | + | GH173 |
| pfam | HRGMv2_4434_12 | HRGMv2_4434_12_15 | 24687 | 26774 | + | Pect-lyase_RHGA_epim | Pect-lyase_RHGA_epim |
| pfam | HRGMv2_4434_12 | HRGMv2_4434_12_16 | 26937 | 27590 | + | Cohesin |
| CAZyme | HRGMv2_4434_12 | HRGMv2_4434_12_17 | 27587 | 31255 | + | CE17 |
Gene ID: HRGMv2_4434_12_6
Type: CAZyme
Location: 9308 - 11077 (+)
Type: CAZyme
Location: 9308 - 11077 (+)
Gene ID: HRGMv2_4434_12_7
Type: STP
Location: 11189 - 14131 (+)
Type: STP
Location: 11189 - 14131 (+)
Gene ID: HRGMv2_4434_12_8
Type:
Location: 14188 - 15063 (+)
Type:
Location: 14188 - 15063 (+)
Gene ID: HRGMv2_4434_12_9
Type: TC
Location: 15160 - 16053 (+)
Type: TC
Location: 15160 - 16053 (+)
Gene ID: HRGMv2_4434_12_10
Type: pfam
Location: 16083 - 18236 (+)
Type: pfam
Location: 16083 - 18236 (+)
Gene ID: HRGMv2_4434_12_11
Type: pfam
Location: 18263 - 20530 (+)
Type: pfam
Location: 18263 - 20530 (+)
Gene ID: HRGMv2_4434_12_12
Type: TC
Location: 20523 - 21485 (+)
Type: TC
Location: 20523 - 21485 (+)
Gene ID: HRGMv2_4434_12_13
Type: TC
Location: 21498 - 22439 (+)
Type: TC
Location: 21498 - 22439 (+)
Gene ID: HRGMv2_4434_12_14
Type: CAZyme
Location: 22590 - 24440 (+)
Type: CAZyme
Location: 22590 - 24440 (+)
Gene ID: HRGMv2_4434_12_15
Type: pfam
Location: 24687 - 26774 (+)
Type: pfam
Location: 24687 - 26774 (+)
Gene ID: HRGMv2_4434_12_16
Type: pfam
Location: 26937 - 27590 (+)
Type: pfam
Location: 26937 - 27590 (+)
Gene ID: HRGMv2_4434_12_17
Type: CAZyme
Location: 27587 - 31255 (+)
Type: CAZyme
Location: 27587 - 31255 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.