Cluster: HRGMv2_4434_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4434
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_1 | 2 | 1240 | + | 3.D.6.1.2 |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_2 | 1345 | 2307 | + | 3.D.6.1.2 |
| pfam | HRGMv2_4434_31 | HRGMv2_4434_31_3 | 2288 | 2845 | + | FMN_bind |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_4 | 2842 | 3558 | + | 3.D.6.1.2 |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_5 | 3555 | 4139 | + | 3.D.6.1.2 |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_6 | 4232 | 5074 | + | 3.D.6.1.1 |
| pfam | HRGMv2_4434_31 | HRGMv2_4434_31_7 | 5623 | 6462 | + | CoiA_nuc |
| CAZyme | HRGMv2_4434_31 | HRGMv2_4434_31_8 | 7270 | 8325 | - | GH179 |
| pfam | HRGMv2_4434_31 | HRGMv2_4434_31_9 | 8354 | 9229 | - | AP_endonuc_2 |
| NULL(UNKNOWN) | HRGMv2_4434_31 | HRGMv2_4434_31_10 | 9248 | 10087 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4434_31 | HRGMv2_4434_31_11 | 10119 | 12377 | - | GH28 |
| CAZyme | HRGMv2_4434_31 | HRGMv2_4434_31_12 | 12415 | 14355 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_4434_31 | HRGMv2_4434_31_13 | 14694 | 17930 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4434_31 | HRGMv2_4434_31_14 | 17950 | 19314 | + | SBP_bac_1 |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_15 | 19367 | 20299 | + | 3.A.1.1.11 |
| TC | HRGMv2_4434_31 | HRGMv2_4434_31_16 | 20319 | 21215 | + | 3.A.1.1.11 |
Gene ID: HRGMv2_4434_31_1
Type: TC
Location: 2 - 1240 (+)
Type: TC
Location: 2 - 1240 (+)
Gene ID: HRGMv2_4434_31_2
Type: TC
Location: 1345 - 2307 (+)
Type: TC
Location: 1345 - 2307 (+)
Gene ID: HRGMv2_4434_31_3
Type: pfam
Location: 2288 - 2845 (+)
Type: pfam
Location: 2288 - 2845 (+)
Gene ID: HRGMv2_4434_31_4
Type: TC
Location: 2842 - 3558 (+)
Type: TC
Location: 2842 - 3558 (+)
Gene ID: HRGMv2_4434_31_5
Type: TC
Location: 3555 - 4139 (+)
Type: TC
Location: 3555 - 4139 (+)
Gene ID: HRGMv2_4434_31_6
Type: TC
Location: 4232 - 5074 (+)
Type: TC
Location: 4232 - 5074 (+)
Gene ID: HRGMv2_4434_31_7
Type: pfam
Location: 5623 - 6462 (+)
Type: pfam
Location: 5623 - 6462 (+)
Gene ID: HRGMv2_4434_31_8
Type: CAZyme
Location: 7270 - 8325 (-)
Type: CAZyme
Location: 7270 - 8325 (-)
Gene ID: HRGMv2_4434_31_9
Type: pfam
Location: 8354 - 9229 (-)
Type: pfam
Location: 8354 - 9229 (-)
Gene ID: HRGMv2_4434_31_10
Type:
Location: 9248 - 10087 (-)
Type:
Location: 9248 - 10087 (-)
Gene ID: HRGMv2_4434_31_11
Type: CAZyme
Location: 10119 - 12377 (-)
Type: CAZyme
Location: 10119 - 12377 (-)
Gene ID: HRGMv2_4434_31_12
Type: CAZyme
Location: 12415 - 14355 (-)
Type: CAZyme
Location: 12415 - 14355 (-)
Gene ID: HRGMv2_4434_31_13
Type:
Location: 14694 - 17930 (+)
Type:
Location: 14694 - 17930 (+)
Gene ID: HRGMv2_4434_31_14
Type: STP
Location: 17950 - 19314 (+)
Type: STP
Location: 17950 - 19314 (+)
Gene ID: HRGMv2_4434_31_15
Type: TC
Location: 19367 - 20299 (+)
Type: TC
Location: 19367 - 20299 (+)
Gene ID: HRGMv2_4434_31_16
Type: TC
Location: 20319 - 21215 (+)
Type: TC
Location: 20319 - 21215 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.