Cluster: HRGMv2_4432_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4432
- CGC Family ID: CGCFAM_00242
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4432_60 | HRGMv2_4432_60_1 | 315 | 2024 | + | 3.A.7.14.1 |
| TF | HRGMv2_4432_60 | HRGMv2_4432_60_2 | 2207 | 3049 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_4432_60 | HRGMv2_4432_60_3 | 3351 | 4649 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4432_60 | HRGMv2_4432_60_4 | 4868 | 5761 | + | 3.A.1.1.18 |
| TC | HRGMv2_4432_60 | HRGMv2_4432_60_5 | 5777 | 6634 | + | 3.A.1.1.18 |
| CAZyme | HRGMv2_4432_60 | HRGMv2_4432_60_6 | 6690 | 8855 | + | GH112 |
Gene ID: HRGMv2_4432_60_1
Type: TC
Location: 315 - 2024 (+)
Type: TC
Location: 315 - 2024 (+)
Gene ID: HRGMv2_4432_60_2
Type: TF
Location: 2207 - 3049 (-)
Type: TF
Location: 2207 - 3049 (-)
Gene ID: HRGMv2_4432_60_3
Type:
Location: 3351 - 4649 (+)
Type:
Location: 3351 - 4649 (+)
Gene ID: HRGMv2_4432_60_4
Type: TC
Location: 4868 - 5761 (+)
Type: TC
Location: 4868 - 5761 (+)
Gene ID: HRGMv2_4432_60_5
Type: TC
Location: 5777 - 6634 (+)
Type: TC
Location: 5777 - 6634 (+)
Gene ID: HRGMv2_4432_60_6
Type: CAZyme
Location: 6690 - 8855 (+)
Type: CAZyme
Location: 6690 - 8855 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pelethomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4432_60_3 | vegan > omnivore | 2.07658 | 0.00450 |
| HRGMv2_4432_60_4 | vegan > omnivore | 2.59993 | 0.00450 |
| HRGMv2_4432_60_4 | vegetarian > omnivore | 1.42193 | 0.02677 |
| HRGMv2_4432_60_5 | vegan > omnivore | 1.73569 | 0.00450 |
| HRGMv2_4432_60_5 | vegetarian > omnivore | 2.17592 | 0.03783 |