Cluster: HRGMv2_4432_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4432
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4432_54 | HRGMv2_4432_54_8 | 6803 | 7459 | - | 9.B.149.1.11 |
| pfam | HRGMv2_4432_54 | HRGMv2_4432_54_9 | 7752 | 8456 | + | VTT_dom |
| CAZyme | HRGMv2_4432_54 | HRGMv2_4432_54_10 | 8453 | 9706 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_4432_54 | HRGMv2_4432_54_11 | 9837 | 10553 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4432_54 | HRGMv2_4432_54_12 | 10568 | 11227 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4432_54 | HRGMv2_4432_54_13 | 11217 | 12098 | - | 3.A.1.132.6 |
Gene ID: HRGMv2_4432_54_8
Type: TC
Location: 6803 - 7459 (-)
Type: TC
Location: 6803 - 7459 (-)
Gene ID: HRGMv2_4432_54_9
Type: pfam
Location: 7752 - 8456 (+)
Type: pfam
Location: 7752 - 8456 (+)
Gene ID: HRGMv2_4432_54_10
Type: CAZyme
Location: 8453 - 9706 (+)
Type: CAZyme
Location: 8453 - 9706 (+)
Gene ID: HRGMv2_4432_54_11
Type:
Location: 9837 - 10553 (-)
Type:
Location: 9837 - 10553 (-)
Gene ID: HRGMv2_4432_54_12
Type:
Location: 10568 - 11227 (-)
Type:
Location: 10568 - 11227 (-)
Gene ID: HRGMv2_4432_54_13
Type: TC
Location: 11217 - 12098 (-)
Type: TC
Location: 11217 - 12098 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pelethomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4432_54_8 | vegetarian > vegan | 1.45122 | 0.00050 |
| HRGMv2_4432_54_13 | vegetarian > vegan | 2.55403 | 0.00050 |