Cluster: HRGMv2_4431_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_4431
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4431_59 | HRGMv2_4431_59_1 | 217 | 1098 | - | 3.A.1.103.6 |
| STP | HRGMv2_4431_59 | HRGMv2_4431_59_2 | 1103 | 2275 | - | Fer4 | Fer4 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_3 | 2289 | 3275 | - | GT2 |
| pfam | HRGMv2_4431_59 | HRGMv2_4431_59_4 | 3286 | 4446 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_5 | 4443 | 5399 | - | GT2 |
| pfam | HRGMv2_4431_59 | HRGMv2_4431_59_6 | 5396 | 5941 | - | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_7 | 5946 | 6935 | - | GT2 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_8 | 6939 | 7925 | - | GT2 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_9 | 7922 | 8944 | - | GT2 |
| pfam | HRGMv2_4431_59 | HRGMv2_4431_59_10 | 8932 | 10005 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_11 | 9980 | 11188 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4431_59 | HRGMv2_4431_59_12 | 11287 | 11424 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_13 | 11543 | 12247 | - | GT32 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_14 | 12255 | 13055 | - | GT2 |
| CAZyme | HRGMv2_4431_59 | HRGMv2_4431_59_15 | 13060 | 14142 | - | GT4 |
| TC | HRGMv2_4431_59 | HRGMv2_4431_59_16 | 14139 | 14837 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4431_59_1
Type: TC
Location: 217 - 1098 (-)
Type: TC
Location: 217 - 1098 (-)
Gene ID: HRGMv2_4431_59_2
Type: STP
Location: 1103 - 2275 (-)
Type: STP
Location: 1103 - 2275 (-)
Gene ID: HRGMv2_4431_59_3
Type: CAZyme
Location: 2289 - 3275 (-)
Type: CAZyme
Location: 2289 - 3275 (-)
Gene ID: HRGMv2_4431_59_4
Type: pfam
Location: 3286 - 4446 (-)
Type: pfam
Location: 3286 - 4446 (-)
Gene ID: HRGMv2_4431_59_5
Type: CAZyme
Location: 4443 - 5399 (-)
Type: CAZyme
Location: 4443 - 5399 (-)
Gene ID: HRGMv2_4431_59_6
Type: pfam
Location: 5396 - 5941 (-)
Type: pfam
Location: 5396 - 5941 (-)
Gene ID: HRGMv2_4431_59_7
Type: CAZyme
Location: 5946 - 6935 (-)
Type: CAZyme
Location: 5946 - 6935 (-)
Gene ID: HRGMv2_4431_59_8
Type: CAZyme
Location: 6939 - 7925 (-)
Type: CAZyme
Location: 6939 - 7925 (-)
Gene ID: HRGMv2_4431_59_9
Type: CAZyme
Location: 7922 - 8944 (-)
Type: CAZyme
Location: 7922 - 8944 (-)
Gene ID: HRGMv2_4431_59_10
Type: pfam
Location: 8932 - 10005 (-)
Type: pfam
Location: 8932 - 10005 (-)
Gene ID: HRGMv2_4431_59_11
Type: CAZyme
Location: 9980 - 11188 (-)
Type: CAZyme
Location: 9980 - 11188 (-)
Gene ID: HRGMv2_4431_59_12
Type:
Location: 11287 - 11424 (+)
Type:
Location: 11287 - 11424 (+)
Gene ID: HRGMv2_4431_59_13
Type: CAZyme
Location: 11543 - 12247 (-)
Type: CAZyme
Location: 11543 - 12247 (-)
Gene ID: HRGMv2_4431_59_14
Type: CAZyme
Location: 12255 - 13055 (-)
Type: CAZyme
Location: 12255 - 13055 (-)
Gene ID: HRGMv2_4431_59_15
Type: CAZyme
Location: 13060 - 14142 (-)
Type: CAZyme
Location: 13060 - 14142 (-)
Gene ID: HRGMv2_4431_59_16
Type: TC
Location: 14139 - 14837 (-)
Type: TC
Location: 14139 - 14837 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-272
Species
CAG-272 sp900556615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.