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Cluster: HRGMv2_4430_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4430_19 HRGMv2_4430_19_10 10514 11272 + 8.A.3.2.3
TC HRGMv2_4430_19 HRGMv2_4430_19_11 11269 12045 + 8.A.3.2.1
TC HRGMv2_4430_19 HRGMv2_4430_19_12 12080 13534 + 9.B.18.1.2
CAZyme HRGMv2_4430_19 HRGMv2_4430_19_13 13531 14688 + GT4
CAZyme HRGMv2_4430_19 HRGMv2_4430_19_14 14666 15862 + GT4
pfam HRGMv2_4430_19 HRGMv2_4430_19_15 15874 16914 + Acyl_transf_3
pfam HRGMv2_4430_19 HRGMv2_4430_19_16 16931 18082 + Radical_SAM | SPASM
CAZyme HRGMv2_4430_19 HRGMv2_4430_19_17 18088 19188 + GT4
CAZyme HRGMv2_4430_19 HRGMv2_4430_19_18 19193 20434 + GT4
Gene ID: HRGMv2_4430_19_10
Type: TC
Location: 10514 - 11272 (+)
Gene ID: HRGMv2_4430_19_11
Type: TC
Location: 11269 - 12045 (+)
Gene ID: HRGMv2_4430_19_12
Type: TC
Location: 12080 - 13534 (+)
Gene ID: HRGMv2_4430_19_13
Type: CAZyme
Location: 13531 - 14688 (+)
Gene ID: HRGMv2_4430_19_14
Type: CAZyme
Location: 14666 - 15862 (+)
Gene ID: HRGMv2_4430_19_15
Type: pfam
Location: 15874 - 16914 (+)
Gene ID: HRGMv2_4430_19_16
Type: pfam
Location: 16931 - 18082 (+)
Gene ID: HRGMv2_4430_19_17
Type: CAZyme
Location: 18088 - 19188 (+)
Gene ID: HRGMv2_4430_19_18
Type: CAZyme
Location: 19193 - 20434 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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