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Cluster: HRGMv2_4429_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4429_4 HRGMv2_4429_4_22 28767 30854 + 2.A.6.5.1
TC HRGMv2_4429_4 HRGMv2_4429_4_23 30861 33086 + 9.B.74.1.4
TF HRGMv2_4429_4 HRGMv2_4429_4_24 33417 33617 - Arc
NULL(UNKNOWN) HRGMv2_4429_4 HRGMv2_4429_4_25 33727 34107 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4429_4 HRGMv2_4429_4_26 34652 35932 - GH18
pfam HRGMv2_4429_4 HRGMv2_4429_4_27 35978 37471 - Polysacc_synt
STP HRGMv2_4429_4 HRGMv2_4429_4_28 37713 38990 + AAA
CAZyme HRGMv2_4429_4 HRGMv2_4429_4_29 39722 42082 + CE2
CAZyme HRGMv2_4429_4 HRGMv2_4429_4_30 42786 45107 + CE2
TC HRGMv2_4429_4 HRGMv2_4429_4_31 45586 46557 + 3.A.1.132.1
TC HRGMv2_4429_4 HRGMv2_4429_4_32 46557 47258 + 3.A.1.132.1
Gene ID: HRGMv2_4429_4_22
Type: TC
Location: 28767 - 30854 (+)
Gene ID: HRGMv2_4429_4_23
Type: TC
Location: 30861 - 33086 (+)
Gene ID: HRGMv2_4429_4_24
Type: TF
Location: 33417 - 33617 (-)
Gene ID: HRGMv2_4429_4_25
Type:
Location: 33727 - 34107 (+)
Gene ID: HRGMv2_4429_4_26
Type: CAZyme
Location: 34652 - 35932 (-)
Gene ID: HRGMv2_4429_4_27
Type: pfam
Location: 35978 - 37471 (-)
Gene ID: HRGMv2_4429_4_28
Type: STP
Location: 37713 - 38990 (+)
Gene ID: HRGMv2_4429_4_29
Type: CAZyme
Location: 39722 - 42082 (+)
Gene ID: HRGMv2_4429_4_30
Type: CAZyme
Location: 42786 - 45107 (+)
Gene ID: HRGMv2_4429_4_31
Type: TC
Location: 45586 - 46557 (+)
Gene ID: HRGMv2_4429_4_32
Type: TC
Location: 46557 - 47258 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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