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Cluster: HRGMv2_4429_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4429_3 HRGMv2_4429_3_15 15953 18403 - CBM67 | GH78
pfam HRGMv2_4429_3 HRGMv2_4429_3_16 18771 20081 - PolyA_pol | PolyA_pol_RNAbd
TC HRGMv2_4429_3 HRGMv2_4429_3_17 20383 21717 + 3.D.6.1.2
TC HRGMv2_4429_3 HRGMv2_4429_3_18 21739 22671 + 3.D.6.1.2
TC HRGMv2_4429_3 HRGMv2_4429_3_19 22664 23230 + 3.D.6.1.2
TC HRGMv2_4429_3 HRGMv2_4429_3_20 23230 23907 + 3.D.6.1.2
TC HRGMv2_4429_3 HRGMv2_4429_3_21 23907 24494 + 3.D.6.1.2
TC HRGMv2_4429_3 HRGMv2_4429_3_22 24513 25316 + 3.D.6.1.3
CAZyme HRGMv2_4429_3 HRGMv2_4429_3_23 25906 28512 + GH173
TC HRGMv2_4429_3 HRGMv2_4429_3_24 28598 29572 + 8.A.21.2.2
TC HRGMv2_4429_3 HRGMv2_4429_3_25 29844 31601 - 2.A.35.2.1
Gene ID: HRGMv2_4429_3_15
Type: CAZyme
Location: 15953 - 18403 (-)
Gene ID: HRGMv2_4429_3_16
Type: pfam
Location: 18771 - 20081 (-)
Gene ID: HRGMv2_4429_3_17
Type: TC
Location: 20383 - 21717 (+)
Gene ID: HRGMv2_4429_3_18
Type: TC
Location: 21739 - 22671 (+)
Gene ID: HRGMv2_4429_3_19
Type: TC
Location: 22664 - 23230 (+)
Gene ID: HRGMv2_4429_3_20
Type: TC
Location: 23230 - 23907 (+)
Gene ID: HRGMv2_4429_3_21
Type: TC
Location: 23907 - 24494 (+)
Gene ID: HRGMv2_4429_3_22
Type: TC
Location: 24513 - 25316 (+)
Gene ID: HRGMv2_4429_3_23
Type: CAZyme
Location: 25906 - 28512 (+)
Gene ID: HRGMv2_4429_3_24
Type: TC
Location: 28598 - 29572 (+)
Gene ID: HRGMv2_4429_3_25
Type: TC
Location: 29844 - 31601 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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