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Cluster: HRGMv2_4429_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4429_16 HRGMv2_4429_16_16 22236 23654 - GT5
pfam HRGMv2_4429_16 HRGMv2_4429_16_17 23672 24793 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_4429_16 HRGMv2_4429_16_18 24790 26001 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_4429_16 HRGMv2_4429_16_19 26268 28520 - CBM48 | GH13_9
pfam HRGMv2_4429_16 HRGMv2_4429_16_20 28833 29198 + SpoVAC_SpoVAEB
pfam HRGMv2_4429_16 HRGMv2_4429_16_21 29834 30691 + PBP_like_2 | PBP_like_2
TC HRGMv2_4429_16 HRGMv2_4429_16_22 30789 31640 + 3.A.1.7.5
TC HRGMv2_4429_16 HRGMv2_4429_16_23 31637 32527 + 3.A.1.7.5
TC HRGMv2_4429_16 HRGMv2_4429_16_24 32524 33273 + 3.A.1.7.1
Gene ID: HRGMv2_4429_16_16
Type: CAZyme
Location: 22236 - 23654 (-)
Gene ID: HRGMv2_4429_16_17
Type: pfam
Location: 23672 - 24793 (-)
Gene ID: HRGMv2_4429_16_18
Type: pfam
Location: 24790 - 26001 (-)
Gene ID: HRGMv2_4429_16_19
Type: CAZyme
Location: 26268 - 28520 (-)
Gene ID: HRGMv2_4429_16_20
Type: pfam
Location: 28833 - 29198 (+)
Gene ID: HRGMv2_4429_16_21
Type: pfam
Location: 29834 - 30691 (+)
Gene ID: HRGMv2_4429_16_22
Type: TC
Location: 30789 - 31640 (+)
Gene ID: HRGMv2_4429_16_23
Type: TC
Location: 31637 - 32527 (+)
Gene ID: HRGMv2_4429_16_24
Type: TC
Location: 32524 - 33273 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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