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Cluster: HRGMv2_4429_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4429_15 HRGMv2_4429_15_35 25287 25856 - 2.A.107.1.2
CAZyme HRGMv2_4429_15 HRGMv2_4429_15_36 26148 28853 - GT51
NULL(UNKNOWN) HRGMv2_4429_15 HRGMv2_4429_15_37 29170 29526 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4429_15 HRGMv2_4429_15_38 29673 30863 - 9.B.174.1.2
TC HRGMv2_4429_15 HRGMv2_4429_15_39 31032 32258 - 1.A.34.1.3
pfam HRGMv2_4429_15 HRGMv2_4429_15_40 32245 33339 - FtsX | FtsX_ECD
TC HRGMv2_4429_15 HRGMv2_4429_15_41 33336 34040 - 3.A.1.140.1
TF HRGMv2_4429_15 HRGMv2_4429_15_42 34058 35143 - 0037176
pfam HRGMv2_4429_15 HRGMv2_4429_15_43 35419 36504 + tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
CAZyme HRGMv2_4429_15 HRGMv2_4429_15_44 36655 39156 - GH116
Gene ID: HRGMv2_4429_15_35
Type: TC
Location: 25287 - 25856 (-)
Gene ID: HRGMv2_4429_15_36
Type: CAZyme
Location: 26148 - 28853 (-)
Gene ID: HRGMv2_4429_15_37
Type:
Location: 29170 - 29526 (+)
Gene ID: HRGMv2_4429_15_38
Type: TC
Location: 29673 - 30863 (-)
Gene ID: HRGMv2_4429_15_39
Type: TC
Location: 31032 - 32258 (-)
Gene ID: HRGMv2_4429_15_40
Type: pfam
Location: 32245 - 33339 (-)
Gene ID: HRGMv2_4429_15_41
Type: TC
Location: 33336 - 34040 (-)
Gene ID: HRGMv2_4429_15_42
Type: TF
Location: 34058 - 35143 (-)
Gene ID: HRGMv2_4429_15_43
Type: pfam
Location: 35419 - 36504 (+)
Gene ID: HRGMv2_4429_15_44
Type: CAZyme
Location: 36655 - 39156 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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