Cluster: HRGMv2_4428_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4428
- CGC Family ID: CGCFAM_07551
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4428_25 | HRGMv2_4428_25_2 | 1454 | 2737 | - | GH18 |
| STP | HRGMv2_4428_25 | HRGMv2_4428_25_3 | 2858 | 3979 | + | Fer4 |
| STP | HRGMv2_4428_25 | HRGMv2_4428_25_4 | 4003 | 4851 | + | PfkB |
| TC | HRGMv2_4428_25 | HRGMv2_4428_25_5 | 4923 | 5744 | - | 3.A.1.132.3 |
Gene ID: HRGMv2_4428_25_2
Type: CAZyme
Location: 1454 - 2737 (-)
Type: CAZyme
Location: 1454 - 2737 (-)
Gene ID: HRGMv2_4428_25_3
Type: STP
Location: 2858 - 3979 (+)
Type: STP
Location: 2858 - 3979 (+)
Gene ID: HRGMv2_4428_25_4
Type: STP
Location: 4003 - 4851 (+)
Type: STP
Location: 4003 - 4851 (+)
Gene ID: HRGMv2_4428_25_5
Type: TC
Location: 4923 - 5744 (-)
Type: TC
Location: 4923 - 5744 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Hominicoprocola
Species
Hominicoprocola sp934553255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4428_25_2 | vegetarian > vegan | 1.05279 | 0.01054 |