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Cluster: HRGMv2_4424_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4424_24 HRGMv2_4424_24_5 2636 4330 + 3.A.2.1.7
TC HRGMv2_4424_24 HRGMv2_4424_24_6 4359 5276 + 3.A.2.1.5
TC HRGMv2_4424_24 HRGMv2_4424_24_7 5269 6672 + 3.A.2.1.5
pfam HRGMv2_4424_24 HRGMv2_4424_24_8 6672 7082 + ATP-synt_DE | ATP-synt_DE_N
CAZyme HRGMv2_4424_24 HRGMv2_4424_24_9 7146 8705 - GH43_16
TF HRGMv2_4424_24 HRGMv2_4424_24_10 8747 9574 - HTH_AraC
STP HRGMv2_4424_24 HRGMv2_4424_24_11 10050 10856 + LysR_substrate
TC HRGMv2_4424_24 HRGMv2_4424_24_12 10882 11766 + 3.A.1.7.1
TC HRGMv2_4424_24 HRGMv2_4424_24_13 11790 12632 + 3.A.1.7.2
TC HRGMv2_4424_24 HRGMv2_4424_24_14 12643 13392 + 3.A.1.7.5
Gene ID: HRGMv2_4424_24_5
Type: TC
Location: 2636 - 4330 (+)
Gene ID: HRGMv2_4424_24_6
Type: TC
Location: 4359 - 5276 (+)
Gene ID: HRGMv2_4424_24_7
Type: TC
Location: 5269 - 6672 (+)
Gene ID: HRGMv2_4424_24_8
Type: pfam
Location: 6672 - 7082 (+)
Gene ID: HRGMv2_4424_24_9
Type: CAZyme
Location: 7146 - 8705 (-)
Gene ID: HRGMv2_4424_24_10
Type: TF
Location: 8747 - 9574 (-)
Gene ID: HRGMv2_4424_24_11
Type: STP
Location: 10050 - 10856 (+)
Gene ID: HRGMv2_4424_24_12
Type: TC
Location: 10882 - 11766 (+)
Gene ID: HRGMv2_4424_24_13
Type: TC
Location: 11790 - 12632 (+)
Gene ID: HRGMv2_4424_24_14
Type: TC
Location: 12643 - 13392 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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