Cluster: HRGMv2_4424_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4424
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4424_20 | HRGMv2_4424_20_2 | 1070 | 2635 | + | GH30 |
| CAZyme | HRGMv2_4424_20 | HRGMv2_4424_20_3 | 2632 | 6336 | + | GH31_4 |
| CAZyme | HRGMv2_4424_20 | HRGMv2_4424_20_4 | 6497 | 8167 | + | GH43_35 |
| pfam | HRGMv2_4424_20 | HRGMv2_4424_20_5 | 9011 | 9211 | + | Resolvase |
| pfam | HRGMv2_4424_20 | HRGMv2_4424_20_6 | 9208 | 10080 | + | Ubie_methyltran | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_4424_20 | HRGMv2_4424_20_7 | 10200 | 11051 | + | 2.A.7.3.59 |
Gene ID: HRGMv2_4424_20_2
Type: CAZyme
Location: 1070 - 2635 (+)
Type: CAZyme
Location: 1070 - 2635 (+)
Gene ID: HRGMv2_4424_20_3
Type: CAZyme
Location: 2632 - 6336 (+)
Type: CAZyme
Location: 2632 - 6336 (+)
Gene ID: HRGMv2_4424_20_4
Type: CAZyme
Location: 6497 - 8167 (+)
Type: CAZyme
Location: 6497 - 8167 (+)
Gene ID: HRGMv2_4424_20_5
Type: pfam
Location: 9011 - 9211 (+)
Type: pfam
Location: 9011 - 9211 (+)
Gene ID: HRGMv2_4424_20_6
Type: pfam
Location: 9208 - 10080 (+)
Type: pfam
Location: 9208 - 10080 (+)
Gene ID: HRGMv2_4424_20_7
Type: TC
Location: 10200 - 11051 (+)
Type: TC
Location: 10200 - 11051 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faeciplasma
Species
Faeciplasma sp937942105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4424_20_5 | vegetarian > omnivore | 1.35419 | 0.03181 |