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Cluster: HRGMv2_4424_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4424_27 HRGMv2_4424_27_2 1234 2298 + 3.A.1.34.1
pfam HRGMv2_4424_27 HRGMv2_4424_27_3 2399 3349 + BPD_transp_2
TC HRGMv2_4424_27 HRGMv2_4424_27_4 3333 4118 + 3.A.1.34.1
pfam HRGMv2_4424_27 HRGMv2_4424_27_5 4228 4887 - Rce1-like
CAZyme HRGMv2_4424_27 HRGMv2_4424_27_6 5093 7885 - GH3
NULL(UNKNOWN) HRGMv2_4424_27 HRGMv2_4424_27_7 8448 9614 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4424_27 HRGMv2_4424_27_8 9735 10307 - PTAC
TC HRGMv2_4424_27 HRGMv2_4424_27_9 10416 13241 - 9.B.144.1.5
CAZyme HRGMv2_4424_27 HRGMv2_4424_27_10 13271 14173 - GT2
Gene ID: HRGMv2_4424_27_2
Type: TC
Location: 1234 - 2298 (+)
Gene ID: HRGMv2_4424_27_3
Type: pfam
Location: 2399 - 3349 (+)
Gene ID: HRGMv2_4424_27_4
Type: TC
Location: 3333 - 4118 (+)
Gene ID: HRGMv2_4424_27_5
Type: pfam
Location: 4228 - 4887 (-)
Gene ID: HRGMv2_4424_27_6
Type: CAZyme
Location: 5093 - 7885 (-)
Gene ID: HRGMv2_4424_27_7
Type:
Location: 8448 - 9614 (-)
Gene ID: HRGMv2_4424_27_8
Type: pfam
Location: 9735 - 10307 (-)
Gene ID: HRGMv2_4424_27_9
Type: TC
Location: 10416 - 13241 (-)
Gene ID: HRGMv2_4424_27_10
Type: CAZyme
Location: 13271 - 14173 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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