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Cluster: HRGMv2_4423_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4423_11 HRGMv2_4423_11_1 248 1855 - GH3
CAZyme HRGMv2_4423_11 HRGMv2_4423_11_2 1946 4180 - CBM67 | GH78
pfam HRGMv2_4423_11 HRGMv2_4423_11_3 4456 5487 - Lipase_GDSL | Lipase_GDSL_2 | Lipase_GDSL_3
pfam HRGMv2_4423_11 HRGMv2_4423_11_4 5877 6605 - PHP | PHP_C
CAZyme HRGMv2_4423_11 HRGMv2_4423_11_5 6605 8062 - GH51_1
CAZyme HRGMv2_4423_11 HRGMv2_4423_11_6 8059 10245 - GH2
pfam HRGMv2_4423_11 HRGMv2_4423_11_7 10232 11146 - Metallophos | Metallophos_2
TF HRGMv2_4423_11 HRGMv2_4423_11_8 11316 12071 + HTH_AraC | HTH_AraC
TC HRGMv2_4423_11 HRGMv2_4423_11_9 12338 13366 - 2.A.98.1.4
TF HRGMv2_4423_11 HRGMv2_4423_11_10 13475 14326 + HTH_1
TC HRGMv2_4423_11 HRGMv2_4423_11_11 15190 16113 + 3.D.6.1.2
Gene ID: HRGMv2_4423_11_1
Type: CAZyme
Location: 248 - 1855 (-)
Gene ID: HRGMv2_4423_11_2
Type: CAZyme
Location: 1946 - 4180 (-)
Gene ID: HRGMv2_4423_11_3
Type: pfam
Location: 4456 - 5487 (-)
Gene ID: HRGMv2_4423_11_4
Type: pfam
Location: 5877 - 6605 (-)
Gene ID: HRGMv2_4423_11_5
Type: CAZyme
Location: 6605 - 8062 (-)
Gene ID: HRGMv2_4423_11_6
Type: CAZyme
Location: 8059 - 10245 (-)
Gene ID: HRGMv2_4423_11_7
Type: pfam
Location: 10232 - 11146 (-)
Gene ID: HRGMv2_4423_11_8
Type: TF
Location: 11316 - 12071 (+)
Gene ID: HRGMv2_4423_11_9
Type: TC
Location: 12338 - 13366 (-)
Gene ID: HRGMv2_4423_11_10
Type: TF
Location: 13475 - 14326 (+)
Gene ID: HRGMv2_4423_11_11
Type: TC
Location: 15190 - 16113 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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