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Cluster: HRGMv2_4423_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4423_5 HRGMv2_4423_5_9 9362 9928 - 2.A.107.1.2
TC HRGMv2_4423_5 HRGMv2_4423_5_10 10064 10759 + 9.B.120.1.3
pfam HRGMv2_4423_5 HRGMv2_4423_5_11 10774 11520 + Acyl-ACP_TE | Acyl-ACP_TE_C
pfam HRGMv2_4423_5 HRGMv2_4423_5_12 11501 12418 + EamA | EamA
CAZyme HRGMv2_4423_5 HRGMv2_4423_5_13 12429 15404 + GH2
STP HRGMv2_4423_5 HRGMv2_4423_5_14 15460 16287 + PfkB
CAZyme HRGMv2_4423_5 HRGMv2_4423_5_15 16335 17783 - CE4
NULL(UNKNOWN) HRGMv2_4423_5 HRGMv2_4423_5_16 17888 18349 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4423_5 HRGMv2_4423_5_17 18383 18646 - PqqD
CAZyme HRGMv2_4423_5 HRGMv2_4423_5_18 18650 21469 - GH2
Gene ID: HRGMv2_4423_5_9
Type: TC
Location: 9362 - 9928 (-)
Gene ID: HRGMv2_4423_5_10
Type: TC
Location: 10064 - 10759 (+)
Gene ID: HRGMv2_4423_5_11
Type: pfam
Location: 10774 - 11520 (+)
Gene ID: HRGMv2_4423_5_12
Type: pfam
Location: 11501 - 12418 (+)
Gene ID: HRGMv2_4423_5_13
Type: CAZyme
Location: 12429 - 15404 (+)
Gene ID: HRGMv2_4423_5_14
Type: STP
Location: 15460 - 16287 (+)
Gene ID: HRGMv2_4423_5_15
Type: CAZyme
Location: 16335 - 17783 (-)
Gene ID: HRGMv2_4423_5_16
Type:
Location: 17888 - 18349 (-)
Gene ID: HRGMv2_4423_5_17
Type: pfam
Location: 18383 - 18646 (-)
Gene ID: HRGMv2_4423_5_18
Type: CAZyme
Location: 18650 - 21469 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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