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Cluster: HRGMv2_4421_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4421_4 HRGMv2_4421_4_45 48351 48734 + 3.B.1.1.2
TC HRGMv2_4421_4 HRGMv2_4421_4_46 48755 50170 + 3.B.1.1.6
pfam HRGMv2_4421_4 HRGMv2_4421_4_47 50368 51657 - Aminotran_1_2 | Asp_aminotransf
CAZyme HRGMv2_4421_4 HRGMv2_4421_4_48 51894 52673 - GT111
TC HRGMv2_4421_4 HRGMv2_4421_4_49 52901 53527 - 9.B.18.1.2
pfam HRGMv2_4421_4 HRGMv2_4421_4_50 53564 54955 - LytR_cpsA_psr
TC HRGMv2_4421_4 HRGMv2_4421_4_51 55118 55918 - 3.A.1.15.13
TC HRGMv2_4421_4 HRGMv2_4421_4_52 55915 56643 - 3.A.1.15.8
Gene ID: HRGMv2_4421_4_45
Type: TC
Location: 48351 - 48734 (+)
Gene ID: HRGMv2_4421_4_46
Type: TC
Location: 48755 - 50170 (+)
Gene ID: HRGMv2_4421_4_47
Type: pfam
Location: 50368 - 51657 (-)
Gene ID: HRGMv2_4421_4_48
Type: CAZyme
Location: 51894 - 52673 (-)
Gene ID: HRGMv2_4421_4_49
Type: TC
Location: 52901 - 53527 (-)
Gene ID: HRGMv2_4421_4_50
Type: pfam
Location: 53564 - 54955 (-)
Gene ID: HRGMv2_4421_4_51
Type: TC
Location: 55118 - 55918 (-)
Gene ID: HRGMv2_4421_4_52
Type: TC
Location: 55915 - 56643 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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