Cluster: HRGMv2_4420_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4420
- CGC Family ID: CGCFAM_00315
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4420_1 | HRGMv2_4420_1_75 | 81879 | 82517 | + | 9.B.18.1.3 |
| pfam | HRGMv2_4420_1 | HRGMv2_4420_1_76 | 82543 | 83373 | + | HpcH_HpaI |
| pfam | HRGMv2_4420_1 | HRGMv2_4420_1_77 | 83370 | 84263 | + | 2-Hacid_dh | AdoHcyase_NAD | AlaDh_PNT_C | 2-Hacid_dh_C |
| CAZyme | HRGMv2_4420_1 | HRGMv2_4420_1_78 | 84265 | 85428 | + | GT4 |
| pfam | HRGMv2_4420_1 | HRGMv2_4420_1_79 | 85430 | 86299 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| CAZyme | HRGMv2_4420_1 | HRGMv2_4420_1_80 | 86299 | 87270 | + | GT2 |
Gene ID: HRGMv2_4420_1_75
Type: TC
Location: 81879 - 82517 (+)
Type: TC
Location: 81879 - 82517 (+)
Gene ID: HRGMv2_4420_1_76
Type: pfam
Location: 82543 - 83373 (+)
Type: pfam
Location: 82543 - 83373 (+)
Gene ID: HRGMv2_4420_1_77
Type: pfam
Location: 83370 - 84263 (+)
Type: pfam
Location: 83370 - 84263 (+)
Gene ID: HRGMv2_4420_1_78
Type: CAZyme
Location: 84265 - 85428 (+)
Type: CAZyme
Location: 84265 - 85428 (+)
Gene ID: HRGMv2_4420_1_79
Type: pfam
Location: 85430 - 86299 (+)
Type: pfam
Location: 85430 - 86299 (+)
Gene ID: HRGMv2_4420_1_80
Type: CAZyme
Location: 86299 - 87270 (+)
Type: CAZyme
Location: 86299 - 87270 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UMGS1279
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.