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Cluster: HRGMv2_4419_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4419_17 HRGMv2_4419_17_19 17049 18695 - GH25
TC HRGMv2_4419_17 HRGMv2_4419_17_20 18930 20336 - 3.B.1.1.6
TC HRGMv2_4419_17 HRGMv2_4419_17_21 20352 21551 - 3.B.1.1.2
TC HRGMv2_4419_17 HRGMv2_4419_17_22 21579 21935 - 3.B.1.1.2
pfam HRGMv2_4419_17 HRGMv2_4419_17_23 21966 22283 - OAD_gamma
CAZyme HRGMv2_4419_17 HRGMv2_4419_17_24 22559 24130 + GH20
TC HRGMv2_4419_17 HRGMv2_4419_17_25 24193 24744 - 2.A.88.3.1
Gene ID: HRGMv2_4419_17_19
Type: CAZyme
Location: 17049 - 18695 (-)
Gene ID: HRGMv2_4419_17_20
Type: TC
Location: 18930 - 20336 (-)
Gene ID: HRGMv2_4419_17_21
Type: TC
Location: 20352 - 21551 (-)
Gene ID: HRGMv2_4419_17_22
Type: TC
Location: 21579 - 21935 (-)
Gene ID: HRGMv2_4419_17_23
Type: pfam
Location: 21966 - 22283 (-)
Gene ID: HRGMv2_4419_17_24
Type: CAZyme
Location: 22559 - 24130 (+)
Gene ID: HRGMv2_4419_17_25
Type: TC
Location: 24193 - 24744 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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