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Cluster: HRGMv2_4419_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4419_13 HRGMv2_4419_13_9 15744 16940 + GH20
pfam HRGMv2_4419_13 HRGMv2_4419_13_10 16882 17340 + Glyco_H_20C_C
TC HRGMv2_4419_13 HRGMv2_4419_13_11 17407 18117 - 3.A.1.4.10
TC HRGMv2_4419_13 HRGMv2_4419_13_12 18123 18893 - 3.A.1.4.10
TC HRGMv2_4419_13 HRGMv2_4419_13_13 18893 20029 - 3.A.1.4.8
TC HRGMv2_4419_13 HRGMv2_4419_13_14 20029 20901 - 3.A.1.4.10
TC HRGMv2_4419_13 HRGMv2_4419_13_15 20983 22146 - 3.A.1.4.10
Gene ID: HRGMv2_4419_13_9
Type: CAZyme
Location: 15744 - 16940 (+)
Gene ID: HRGMv2_4419_13_10
Type: pfam
Location: 16882 - 17340 (+)
Gene ID: HRGMv2_4419_13_11
Type: TC
Location: 17407 - 18117 (-)
Gene ID: HRGMv2_4419_13_12
Type: TC
Location: 18123 - 18893 (-)
Gene ID: HRGMv2_4419_13_13
Type: TC
Location: 18893 - 20029 (-)
Gene ID: HRGMv2_4419_13_14
Type: TC
Location: 20029 - 20901 (-)
Gene ID: HRGMv2_4419_13_15
Type: TC
Location: 20983 - 22146 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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