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Cluster: HRGMv2_4419_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4419_50 HRGMv2_4419_50_3 1924 3744 - GT2 | GT2
TC HRGMv2_4419_50 HRGMv2_4419_50_4 3758 4501 - 3.A.1.103.1
TC HRGMv2_4419_50 HRGMv2_4419_50_5 4514 5317 - 3.A.1.103.6
pfam HRGMv2_4419_50 HRGMv2_4419_50_6 5426 6103 + DUF421
pfam HRGMv2_4419_50 HRGMv2_4419_50_7 6107 6457 + DUF4363
TC HRGMv2_4419_50 HRGMv2_4419_50_8 6632 7372 + 3.A.1.3.27
TC HRGMv2_4419_50 HRGMv2_4419_50_9 7416 8243 + 3.A.1.3.20
TC HRGMv2_4419_50 HRGMv2_4419_50_10 8233 8973 + 3.A.1.3.25
Gene ID: HRGMv2_4419_50_3
Type: CAZyme
Location: 1924 - 3744 (-)
Gene ID: HRGMv2_4419_50_4
Type: TC
Location: 3758 - 4501 (-)
Gene ID: HRGMv2_4419_50_5
Type: TC
Location: 4514 - 5317 (-)
Gene ID: HRGMv2_4419_50_6
Type: pfam
Location: 5426 - 6103 (+)
Gene ID: HRGMv2_4419_50_7
Type: pfam
Location: 6107 - 6457 (+)
Gene ID: HRGMv2_4419_50_8
Type: TC
Location: 6632 - 7372 (+)
Gene ID: HRGMv2_4419_50_9
Type: TC
Location: 7416 - 8243 (+)
Gene ID: HRGMv2_4419_50_10
Type: TC
Location: 8233 - 8973 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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