Cluster: HRGMv2_4417_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4417
- CGC Family ID: CGCFAM_10610
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4417_71 | HRGMv2_4417_71_1 | 25 | 597 | - | 2.A.20.1.7 |
| NULL(UNKNOWN) | HRGMv2_4417_71 | HRGMv2_4417_71_2 | 774 | 1688 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4417_71 | HRGMv2_4417_71_3 | 1847 | 4378 | - | GH2 |
| TF | HRGMv2_4417_71 | HRGMv2_4417_71_4 | 4612 | 5421 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_4417_71 | HRGMv2_4417_71_5 | 5424 | 6377 | - | Exo_endo_phos |
| TC | HRGMv2_4417_71 | HRGMv2_4417_71_6 | 6437 | 7372 | - | 1.A.35.3.2 |
Gene ID: HRGMv2_4417_71_1
Type: TC
Location: 25 - 597 (-)
Type: TC
Location: 25 - 597 (-)
Gene ID: HRGMv2_4417_71_2
Type:
Location: 774 - 1688 (-)
Type:
Location: 774 - 1688 (-)
Gene ID: HRGMv2_4417_71_3
Type: CAZyme
Location: 1847 - 4378 (-)
Type: CAZyme
Location: 1847 - 4378 (-)
Gene ID: HRGMv2_4417_71_4
Type: TF
Location: 4612 - 5421 (+)
Type: TF
Location: 4612 - 5421 (+)
Gene ID: HRGMv2_4417_71_5
Type: pfam
Location: 5424 - 6377 (-)
Type: pfam
Location: 5424 - 6377 (-)
Gene ID: HRGMv2_4417_71_6
Type: TC
Location: 6437 - 7372 (-)
Type: TC
Location: 6437 - 7372 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.