Cluster: HRGMv2_4417_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4417
- CGC Family ID: CGCFAM_00932
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4417_50 | HRGMv2_4417_50_1 | 3 | 896 | - | 3.A.1.2.13 |
| TC | HRGMv2_4417_50 | HRGMv2_4417_50_2 | 898 | 2397 | - | 3.A.1.2.6 |
| STP | HRGMv2_4417_50 | HRGMv2_4417_50_3 | 2471 | 3559 | - | Peripla_BP_1 |
| pfam | HRGMv2_4417_50 | HRGMv2_4417_50_4 | 3602 | 4522 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4417_50 | HRGMv2_4417_50_5 | 4538 | 5572 | - | GH179 |
| TF | HRGMv2_4417_50 | HRGMv2_4417_50_6 | 5835 | 6851 | + | LacI |
| TF | HRGMv2_4417_50 | HRGMv2_4417_50_7 | 7316 | 7660 | + | PadR |
| TC | HRGMv2_4417_50 | HRGMv2_4417_50_8 | 7784 | 9160 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_4417_50_1
Type: TC
Location: 3 - 896 (-)
Type: TC
Location: 3 - 896 (-)
Gene ID: HRGMv2_4417_50_2
Type: TC
Location: 898 - 2397 (-)
Type: TC
Location: 898 - 2397 (-)
Gene ID: HRGMv2_4417_50_3
Type: STP
Location: 2471 - 3559 (-)
Type: STP
Location: 2471 - 3559 (-)
Gene ID: HRGMv2_4417_50_4
Type: pfam
Location: 3602 - 4522 (-)
Type: pfam
Location: 3602 - 4522 (-)
Gene ID: HRGMv2_4417_50_5
Type: CAZyme
Location: 4538 - 5572 (-)
Type: CAZyme
Location: 4538 - 5572 (-)
Gene ID: HRGMv2_4417_50_6
Type: TF
Location: 5835 - 6851 (+)
Type: TF
Location: 5835 - 6851 (+)
Gene ID: HRGMv2_4417_50_7
Type: TF
Location: 7316 - 7660 (+)
Type: TF
Location: 7316 - 7660 (+)
Gene ID: HRGMv2_4417_50_8
Type: TC
Location: 7784 - 9160 (+)
Type: TC
Location: 7784 - 9160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.