Cluster: HRGMv2_4417_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4417
- CGC Family ID: CGCFAM_10609
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_7 | 9501 | 10709 | - | 3.B.1.1.2 |
| pfam | HRGMv2_4417_9 | HRGMv2_4417_9_8 | 10725 | 11105 | - | OAD_gamma |
| CAZyme | HRGMv2_4417_9 | HRGMv2_4417_9_9 | 11226 | 13169 | - | GH127 |
| NULL(UNKNOWN) | HRGMv2_4417_9 | HRGMv2_4417_9_10 | 13323 | 13457 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4417_9 | HRGMv2_4417_9_11 | 13482 | 14165 | - | ECF-ribofla_trS |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_12 | 14162 | 15712 | - | 3.A.1.32.2 |
| pfam | HRGMv2_4417_9 | HRGMv2_4417_9_13 | 15685 | 16557 | - | CbiQ |
| pfam | HRGMv2_4417_9 | HRGMv2_4417_9_14 | 16572 | 17060 | - | CobA_CobO_BtuR |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_15 | 17057 | 18085 | - | 9.B.157.1.1 |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_16 | 18122 | 20338 | - | 3.A.7.16.1 |
| peptidase | HRGMv2_4417_9 | HRGMv2_4417_9_17 | 20346 | 21320 | - | S09.UPC |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_18 | 21418 | 22035 | - | 2.A.115.2.14 |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_19 | 22054 | 22764 | - | 3.A.1.4.10 |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_20 | 22777 | 23535 | - | 3.A.1.4.10 |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_21 | 23535 | 24620 | - | 3.A.1.4.8 |
| TC | HRGMv2_4417_9 | HRGMv2_4417_9_22 | 24634 | 25515 | - | 3.A.1.4.10 |
Gene ID: HRGMv2_4417_9_7
Type: TC
Location: 9501 - 10709 (-)
Type: TC
Location: 9501 - 10709 (-)
Gene ID: HRGMv2_4417_9_8
Type: pfam
Location: 10725 - 11105 (-)
Type: pfam
Location: 10725 - 11105 (-)
Gene ID: HRGMv2_4417_9_9
Type: CAZyme
Location: 11226 - 13169 (-)
Type: CAZyme
Location: 11226 - 13169 (-)
Gene ID: HRGMv2_4417_9_10
Type:
Location: 13323 - 13457 (+)
Type:
Location: 13323 - 13457 (+)
Gene ID: HRGMv2_4417_9_11
Type: pfam
Location: 13482 - 14165 (-)
Type: pfam
Location: 13482 - 14165 (-)
Gene ID: HRGMv2_4417_9_12
Type: TC
Location: 14162 - 15712 (-)
Type: TC
Location: 14162 - 15712 (-)
Gene ID: HRGMv2_4417_9_13
Type: pfam
Location: 15685 - 16557 (-)
Type: pfam
Location: 15685 - 16557 (-)
Gene ID: HRGMv2_4417_9_14
Type: pfam
Location: 16572 - 17060 (-)
Type: pfam
Location: 16572 - 17060 (-)
Gene ID: HRGMv2_4417_9_15
Type: TC
Location: 17057 - 18085 (-)
Type: TC
Location: 17057 - 18085 (-)
Gene ID: HRGMv2_4417_9_16
Type: TC
Location: 18122 - 20338 (-)
Type: TC
Location: 18122 - 20338 (-)
Gene ID: HRGMv2_4417_9_17
Type: peptidase
Location: 20346 - 21320 (-)
Type: peptidase
Location: 20346 - 21320 (-)
Gene ID: HRGMv2_4417_9_18
Type: TC
Location: 21418 - 22035 (-)
Type: TC
Location: 21418 - 22035 (-)
Gene ID: HRGMv2_4417_9_19
Type: TC
Location: 22054 - 22764 (-)
Type: TC
Location: 22054 - 22764 (-)
Gene ID: HRGMv2_4417_9_20
Type: TC
Location: 22777 - 23535 (-)
Type: TC
Location: 22777 - 23535 (-)
Gene ID: HRGMv2_4417_9_21
Type: TC
Location: 23535 - 24620 (-)
Type: TC
Location: 23535 - 24620 (-)
Gene ID: HRGMv2_4417_9_22
Type: TC
Location: 24634 - 25515 (-)
Type: TC
Location: 24634 - 25515 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scybalenecus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.