Cluster: HRGMv2_4411_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4411
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4411_37 | HRGMv2_4411_37_2 | 1316 | 2293 | + | 3.A.1.34.1 |
| TC | HRGMv2_4411_37 | HRGMv2_4411_37_3 | 2286 | 3083 | + | 3.A.1.34.1 |
| pfam | HRGMv2_4411_37 | HRGMv2_4411_37_4 | 3675 | 4166 | + | CarD_TRCF_RID |
| STP | HRGMv2_4411_37 | HRGMv2_4411_37_5 | 4697 | 6097 | + | Pyr_redox_2 |
| CAZyme | HRGMv2_4411_37 | HRGMv2_4411_37_6 | 6102 | 7316 | + | GH3 |
| CAZyme | HRGMv2_4411_37 | HRGMv2_4411_37_7 | 7578 | 9251 | + | GH13_28 |
Gene ID: HRGMv2_4411_37_2
Type: TC
Location: 1316 - 2293 (+)
Type: TC
Location: 1316 - 2293 (+)
Gene ID: HRGMv2_4411_37_3
Type: TC
Location: 2286 - 3083 (+)
Type: TC
Location: 2286 - 3083 (+)
Gene ID: HRGMv2_4411_37_4
Type: pfam
Location: 3675 - 4166 (+)
Type: pfam
Location: 3675 - 4166 (+)
Gene ID: HRGMv2_4411_37_5
Type: STP
Location: 4697 - 6097 (+)
Type: STP
Location: 4697 - 6097 (+)
Gene ID: HRGMv2_4411_37_6
Type: CAZyme
Location: 6102 - 7316 (+)
Type: CAZyme
Location: 6102 - 7316 (+)
Gene ID: HRGMv2_4411_37_7
Type: CAZyme
Location: 7578 - 9251 (+)
Type: CAZyme
Location: 7578 - 9251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp904393835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.