Cluster: HRGMv2_4411_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4411
- CGC Family ID: CGCFAM_00117
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4411_18 | HRGMv2_4411_18_28 | 33496 | 34320 | - | 3.A.1.132.3 |
| NULL(UNKNOWN) | HRGMv2_4411_18 | HRGMv2_4411_18_29 | 34432 | 35232 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4411_18 | HRGMv2_4411_18_30 | 35528 | 37177 | - | GH13_36 |
| TC | HRGMv2_4411_18 | HRGMv2_4411_18_31 | 37480 | 38343 | - | 3.A.1.1.27 |
| TC | HRGMv2_4411_18 | HRGMv2_4411_18_32 | 38340 | 39836 | - | 3.A.1.1.27 |
Gene ID: HRGMv2_4411_18_28
Type: TC
Location: 33496 - 34320 (-)
Type: TC
Location: 33496 - 34320 (-)
Gene ID: HRGMv2_4411_18_29
Type:
Location: 34432 - 35232 (-)
Type:
Location: 34432 - 35232 (-)
Gene ID: HRGMv2_4411_18_30
Type: CAZyme
Location: 35528 - 37177 (-)
Type: CAZyme
Location: 35528 - 37177 (-)
Gene ID: HRGMv2_4411_18_31
Type: TC
Location: 37480 - 38343 (-)
Type: TC
Location: 37480 - 38343 (-)
Gene ID: HRGMv2_4411_18_32
Type: TC
Location: 38340 - 39836 (-)
Type: TC
Location: 38340 - 39836 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp904393835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.