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Cluster: HRGMv2_4410_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4410_51 HRGMv2_4410_51_2 2660 4261 + 2.A.1.15.16
CAZyme HRGMv2_4410_51 HRGMv2_4410_51_3 4583 5662 - GT2
pfam HRGMv2_4410_51 HRGMv2_4410_51_4 5676 6245 - Collagen
CAZyme HRGMv2_4410_51 HRGMv2_4410_51_5 6389 7159 + CE4
STP HRGMv2_4410_51 HRGMv2_4410_51_6 7427 10003 + SBP_bac_1
TC HRGMv2_4410_51 HRGMv2_4410_51_7 10123 10971 + 3.A.1.1.20
TC HRGMv2_4410_51 HRGMv2_4410_51_8 10968 11843 + 3.A.1.1.45
pfam HRGMv2_4410_51 HRGMv2_4410_51_9 11850 13736 + HlyD_3
pfam HRGMv2_4410_51 HRGMv2_4410_51_10 13769 14881 + MacB_PCD
TC HRGMv2_4410_51 HRGMv2_4410_51_11 14841 15239 + 3.A.1.1.22
Gene ID: HRGMv2_4410_51_2
Type: TC
Location: 2660 - 4261 (+)
Gene ID: HRGMv2_4410_51_3
Type: CAZyme
Location: 4583 - 5662 (-)
Gene ID: HRGMv2_4410_51_4
Type: pfam
Location: 5676 - 6245 (-)
Gene ID: HRGMv2_4410_51_5
Type: CAZyme
Location: 6389 - 7159 (+)
Gene ID: HRGMv2_4410_51_6
Type: STP
Location: 7427 - 10003 (+)
Gene ID: HRGMv2_4410_51_7
Type: TC
Location: 10123 - 10971 (+)
Gene ID: HRGMv2_4410_51_8
Type: TC
Location: 10968 - 11843 (+)
Gene ID: HRGMv2_4410_51_9
Type: pfam
Location: 11850 - 13736 (+)
Gene ID: HRGMv2_4410_51_10
Type: pfam
Location: 13769 - 14881 (+)
Gene ID: HRGMv2_4410_51_11
Type: TC
Location: 14841 - 15239 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4410_51_8 vegetarian > omnivore 1.38881 0.00701
HRGMv2_4410_51_8 vegetarian > vegan 1.55105 0.00861

🧭 Explore Read Mapping of CGC

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