Cluster: HRGMv2_4409_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4409
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4409_18 | HRGMv2_4409_18_19 | 22435 | 23769 | + | GH1 |
| pfam | HRGMv2_4409_18 | HRGMv2_4409_18_20 | 23804 | 24520 | + | Exo_endo_phos |
| TC | HRGMv2_4409_18 | HRGMv2_4409_18_21 | 25035 | 26516 | + | 3.B.1.1.2 |
| pfam | HRGMv2_4409_18 | HRGMv2_4409_18_22 | 26594 | 27574 | + | OAD_gamma |
| TC | HRGMv2_4409_18 | HRGMv2_4409_18_23 | 27618 | 27992 | + | 3.B.1.1.2 |
| TC | HRGMv2_4409_18 | HRGMv2_4409_18_24 | 28065 | 29300 | + | 3.B.1.1.3 |
| TC | HRGMv2_4409_18 | HRGMv2_4409_18_25 | 29349 | 29900 | + | 3.B.1.1.1 |
Gene ID: HRGMv2_4409_18_19
Type: CAZyme
Location: 22435 - 23769 (+)
Type: CAZyme
Location: 22435 - 23769 (+)
Gene ID: HRGMv2_4409_18_20
Type: pfam
Location: 23804 - 24520 (+)
Type: pfam
Location: 23804 - 24520 (+)
Gene ID: HRGMv2_4409_18_21
Type: TC
Location: 25035 - 26516 (+)
Type: TC
Location: 25035 - 26516 (+)
Gene ID: HRGMv2_4409_18_22
Type: pfam
Location: 26594 - 27574 (+)
Type: pfam
Location: 26594 - 27574 (+)
Gene ID: HRGMv2_4409_18_23
Type: TC
Location: 27618 - 27992 (+)
Type: TC
Location: 27618 - 27992 (+)
Gene ID: HRGMv2_4409_18_24
Type: TC
Location: 28065 - 29300 (+)
Type: TC
Location: 28065 - 29300 (+)
Gene ID: HRGMv2_4409_18_25
Type: TC
Location: 29349 - 29900 (+)
Type: TC
Location: 29349 - 29900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-448
Species
CAG-448 sp945929845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.