Cluster: HRGMv2_4409_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_4409
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_8 | 8772 | 9965 | - | GT4 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_9 | 9980 | 10939 | - | GT2 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_10 | 10961 | 11926 | - | GT2 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_11 | 11967 | 12911 | - | GT8 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_12 | 12925 | 13617 | - | GT32 |
| pfam | HRGMv2_4409_17 | HRGMv2_4409_17_13 | 13669 | 14784 | - | EpsG |
| pfam | HRGMv2_4409_17 | HRGMv2_4409_17_14 | 14912 | 15967 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_15 | 16029 | 16922 | - | GT2 |
| pfam | HRGMv2_4409_17 | HRGMv2_4409_17_16 | 16943 | 17494 | - | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_17 | 17552 | 18718 | - | GT4 |
| CAZyme | HRGMv2_4409_17 | HRGMv2_4409_17_18 | 18788 | 19873 | - | GT4 |
| pfam | HRGMv2_4409_17 | HRGMv2_4409_17_19 | 19899 | 20522 | - | Hexapep | PglD_N |
| TC | HRGMv2_4409_17 | HRGMv2_4409_17_20 | 20519 | 21154 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4409_17_8
Type: CAZyme
Location: 8772 - 9965 (-)
Type: CAZyme
Location: 8772 - 9965 (-)
Gene ID: HRGMv2_4409_17_9
Type: CAZyme
Location: 9980 - 10939 (-)
Type: CAZyme
Location: 9980 - 10939 (-)
Gene ID: HRGMv2_4409_17_10
Type: CAZyme
Location: 10961 - 11926 (-)
Type: CAZyme
Location: 10961 - 11926 (-)
Gene ID: HRGMv2_4409_17_11
Type: CAZyme
Location: 11967 - 12911 (-)
Type: CAZyme
Location: 11967 - 12911 (-)
Gene ID: HRGMv2_4409_17_12
Type: CAZyme
Location: 12925 - 13617 (-)
Type: CAZyme
Location: 12925 - 13617 (-)
Gene ID: HRGMv2_4409_17_13
Type: pfam
Location: 13669 - 14784 (-)
Type: pfam
Location: 13669 - 14784 (-)
Gene ID: HRGMv2_4409_17_14
Type: pfam
Location: 14912 - 15967 (-)
Type: pfam
Location: 14912 - 15967 (-)
Gene ID: HRGMv2_4409_17_15
Type: CAZyme
Location: 16029 - 16922 (-)
Type: CAZyme
Location: 16029 - 16922 (-)
Gene ID: HRGMv2_4409_17_16
Type: pfam
Location: 16943 - 17494 (-)
Type: pfam
Location: 16943 - 17494 (-)
Gene ID: HRGMv2_4409_17_17
Type: CAZyme
Location: 17552 - 18718 (-)
Type: CAZyme
Location: 17552 - 18718 (-)
Gene ID: HRGMv2_4409_17_18
Type: CAZyme
Location: 18788 - 19873 (-)
Type: CAZyme
Location: 18788 - 19873 (-)
Gene ID: HRGMv2_4409_17_19
Type: pfam
Location: 19899 - 20522 (-)
Type: pfam
Location: 19899 - 20522 (-)
Gene ID: HRGMv2_4409_17_20
Type: TC
Location: 20519 - 21154 (-)
Type: TC
Location: 20519 - 21154 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-448
Species
CAG-448 sp945929845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.