Cluster: HRGMv2_4409_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4409
- CGC Family ID: CGCFAM_10421
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4409_5 | HRGMv2_4409_5_1 | 264 | 1625 | + | 2.A.38.1.1 |
| TC | HRGMv2_4409_5 | HRGMv2_4409_5_2 | 1632 | 3065 | + | 2.A.38.1.1 |
| CAZyme | HRGMv2_4409_5 | HRGMv2_4409_5_3 | 3174 | 4439 | - | GH109 |
| CAZyme | HRGMv2_4409_5 | HRGMv2_4409_5_4 | 4467 | 8297 | - | GH28 |
| TF | HRGMv2_4409_5 | HRGMv2_4409_5_5 | 8352 | 9437 | - | LacI |
| CAZyme | HRGMv2_4409_5 | HRGMv2_4409_5_6 | 9664 | 10926 | - | GH109 |
Gene ID: HRGMv2_4409_5_1
Type: TC
Location: 264 - 1625 (+)
Type: TC
Location: 264 - 1625 (+)
Gene ID: HRGMv2_4409_5_2
Type: TC
Location: 1632 - 3065 (+)
Type: TC
Location: 1632 - 3065 (+)
Gene ID: HRGMv2_4409_5_3
Type: CAZyme
Location: 3174 - 4439 (-)
Type: CAZyme
Location: 3174 - 4439 (-)
Gene ID: HRGMv2_4409_5_4
Type: CAZyme
Location: 4467 - 8297 (-)
Type: CAZyme
Location: 4467 - 8297 (-)
Gene ID: HRGMv2_4409_5_5
Type: TF
Location: 8352 - 9437 (-)
Type: TF
Location: 8352 - 9437 (-)
Gene ID: HRGMv2_4409_5_6
Type: CAZyme
Location: 9664 - 10926 (-)
Type: CAZyme
Location: 9664 - 10926 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-448
Species
CAG-448 sp945929845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4409_5_6 | vegan > omnivore | 1.17463 | 0.00455 |