Cluster: HRGMv2_4409_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4409
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4409_70 | HRGMv2_4409_70_8 | 9172 | 9780 | - | 9.B.156.3.1 |
| TF | HRGMv2_4409_70 | HRGMv2_4409_70_9 | 10147 | 10389 | + | SpoVT_AbrB |
| pfam | HRGMv2_4409_70 | HRGMv2_4409_70_10 | 10680 | 10880 | - | Rubredoxin |
| CAZyme | HRGMv2_4409_70 | HRGMv2_4409_70_11 | 11019 | 12149 | - | GH171 |
Gene ID: HRGMv2_4409_70_8
Type: TC
Location: 9172 - 9780 (-)
Type: TC
Location: 9172 - 9780 (-)
Gene ID: HRGMv2_4409_70_9
Type: TF
Location: 10147 - 10389 (+)
Type: TF
Location: 10147 - 10389 (+)
Gene ID: HRGMv2_4409_70_10
Type: pfam
Location: 10680 - 10880 (-)
Type: pfam
Location: 10680 - 10880 (-)
Gene ID: HRGMv2_4409_70_11
Type: CAZyme
Location: 11019 - 12149 (-)
Type: CAZyme
Location: 11019 - 12149 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-448
Species
CAG-448 sp945929845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4409_70_10 | vegan > omnivore | 1.44971 | 0.00455 |