Cluster: HRGMv2_4407_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4407
- CGC Family ID: CGCFAM_01437
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4407_56 | HRGMv2_4407_56_7 | 8824 | 9831 | + | 3.A.1.5.11 |
| TC | HRGMv2_4407_56 | HRGMv2_4407_56_8 | 9821 | 10732 | + | 3.A.1.5.39 |
| TC | HRGMv2_4407_56 | HRGMv2_4407_56_9 | 10749 | 11741 | + | 3.A.1.5.2 |
| TC | HRGMv2_4407_56 | HRGMv2_4407_56_10 | 11756 | 12718 | + | 3.A.1.5.15 |
| CAZyme | HRGMv2_4407_56 | HRGMv2_4407_56_11 | 12898 | 14097 | + | CE1 |
| CAZyme | HRGMv2_4407_56 | HRGMv2_4407_56_12 | 14149 | 15345 | + | CE1 |
Gene ID: HRGMv2_4407_56_7
Type: TC
Location: 8824 - 9831 (+)
Type: TC
Location: 8824 - 9831 (+)
Gene ID: HRGMv2_4407_56_8
Type: TC
Location: 9821 - 10732 (+)
Type: TC
Location: 9821 - 10732 (+)
Gene ID: HRGMv2_4407_56_9
Type: TC
Location: 10749 - 11741 (+)
Type: TC
Location: 10749 - 11741 (+)
Gene ID: HRGMv2_4407_56_10
Type: TC
Location: 11756 - 12718 (+)
Type: TC
Location: 11756 - 12718 (+)
Gene ID: HRGMv2_4407_56_11
Type: CAZyme
Location: 12898 - 14097 (+)
Type: CAZyme
Location: 12898 - 14097 (+)
Gene ID: HRGMv2_4407_56_12
Type: CAZyme
Location: 14149 - 15345 (+)
Type: CAZyme
Location: 14149 - 15345 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
JAJPXI01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.