Cluster: HRGMv2_4406_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4406
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4406_31 | HRGMv2_4406_31_2 | 531 | 1469 | - | GT2 |
| pfam | HRGMv2_4406_31 | HRGMv2_4406_31_3 | 1469 | 2926 | - | PMT_2 |
| pfam | HRGMv2_4406_31 | HRGMv2_4406_31_4 | 3149 | 4531 | - | Transpeptidase |
| TC | HRGMv2_4406_31 | HRGMv2_4406_31_5 | 4528 | 6264 | - | 2.A.103.1.7 |
| TC | HRGMv2_4406_31 | HRGMv2_4406_31_6 | 6261 | 7460 | - | 2.A.86.1.8 |
| TC | HRGMv2_4406_31 | HRGMv2_4406_31_7 | 7483 | 8745 | - | 2.A.86.1.8 |
Gene ID: HRGMv2_4406_31_2
Type: CAZyme
Location: 531 - 1469 (-)
Type: CAZyme
Location: 531 - 1469 (-)
Gene ID: HRGMv2_4406_31_3
Type: pfam
Location: 1469 - 2926 (-)
Type: pfam
Location: 1469 - 2926 (-)
Gene ID: HRGMv2_4406_31_4
Type: pfam
Location: 3149 - 4531 (-)
Type: pfam
Location: 3149 - 4531 (-)
Gene ID: HRGMv2_4406_31_5
Type: TC
Location: 4528 - 6264 (-)
Type: TC
Location: 4528 - 6264 (-)
Gene ID: HRGMv2_4406_31_6
Type: TC
Location: 6261 - 7460 (-)
Type: TC
Location: 6261 - 7460 (-)
Gene ID: HRGMv2_4406_31_7
Type: TC
Location: 7483 - 8745 (-)
Type: TC
Location: 7483 - 8745 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.