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Cluster: HRGMv2_4406_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4406_27 HRGMv2_4406_27_2 65 2383 - 3.A.9.1.2
pfam HRGMv2_4406_27 HRGMv2_4406_27_3 2496 3659 - DUF5711
pfam HRGMv2_4406_27 HRGMv2_4406_27_4 3649 4413 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_4406_27 HRGMv2_4406_27_5 4594 5397 - 3.A.1.25.4
TC HRGMv2_4406_27 HRGMv2_4406_27_6 5390 6256 - 3.A.1.26.7
TC HRGMv2_4406_27 HRGMv2_4406_27_7 6281 7135 - 3.A.1.26.7
pfam HRGMv2_4406_27 HRGMv2_4406_27_8 7153 8013 - Cons_hypoth95 | Methyltrans_SAM
CAZyme HRGMv2_4406_27 HRGMv2_4406_27_9 8031 10517 - GT51
Gene ID: HRGMv2_4406_27_2
Type: TC
Location: 65 - 2383 (-)
Gene ID: HRGMv2_4406_27_3
Type: pfam
Location: 2496 - 3659 (-)
Gene ID: HRGMv2_4406_27_4
Type: pfam
Location: 3649 - 4413 (-)
Gene ID: HRGMv2_4406_27_5
Type: TC
Location: 4594 - 5397 (-)
Gene ID: HRGMv2_4406_27_6
Type: TC
Location: 5390 - 6256 (-)
Gene ID: HRGMv2_4406_27_7
Type: TC
Location: 6281 - 7135 (-)
Gene ID: HRGMv2_4406_27_8
Type: pfam
Location: 7153 - 8013 (-)
Gene ID: HRGMv2_4406_27_9
Type: CAZyme
Location: 8031 - 10517 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4406_27_8 vegetarian > vegan 1.13733 0.00842

🧭 Explore Read Mapping of CGC

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