Cluster: HRGMv2_4406_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4406
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4406_23 | HRGMv2_4406_23_21 | 13381 | 14130 | + | 3.A.1.15.5 |
| pfam | HRGMv2_4406_23 | HRGMv2_4406_23_22 | 14127 | 14966 | + | ABC-3 |
| CAZyme | HRGMv2_4406_23 | HRGMv2_4406_23_23 | 15136 | 17532 | - | GH3 |
Gene ID: HRGMv2_4406_23_21
Type: TC
Location: 13381 - 14130 (+)
Type: TC
Location: 13381 - 14130 (+)
Gene ID: HRGMv2_4406_23_22
Type: pfam
Location: 14127 - 14966 (+)
Type: pfam
Location: 14127 - 14966 (+)
Gene ID: HRGMv2_4406_23_23
Type: CAZyme
Location: 15136 - 17532 (-)
Type: CAZyme
Location: 15136 - 17532 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4406_23_21 | vegetarian > vegan | 1.07299 | 0.00842 |